diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index e0833bc9cf7defcbd7a2b540a6c65253722f29d6..f2459b620921ad2a158feae731d739a06ba26b80 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -16,7 +16,7 @@ image: urgi/docker-browsers:latest variables: GRADLE_OPTS: "-Dorg.gradle.daemon=false" GRADLE_USER_HOME: $CI_PROJECT_DIR/.gradle - APP_NAME: gpds + APP_NAME: faidare JAR_PATH: "backend/build/libs/${APP_NAME}.jar" diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index a8af27885cb35113f48b4065d7626544908bfa67..a5d7d2ddaffc191b3ac38931a8a153211cca929d 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,4 +1,4 @@ -# How to contribute to GPDS +# How to contribute to FAIDARE ## Git management @@ -27,9 +27,9 @@ Total 0 (delta 0), reused 0 (delta 0) remote: remote: To create a merge request for chore/explaining_how_to_merge, visit: - remote:   https://forgemia.inra.fr/urgi-is/gpds/merge_requests/new?merge_request%5Bsource_branch%5D=chore/explaining_how_to_merge + remote:   https://forgemia.inra.fr/urgi-is/faidare/merge_requests/new?merge_request%5Bsource_branch%5D=chore/explaining_how_to_merge remote: - To forgemia.inra.fr:urgi-is/gpds.git + To forgemia.inra.fr:urgi-is/faidare.git * [new branch]      chore/explaining_how_to_merge -> chore/explaining_how_to_merge La branche 'chore/explaining_how_to_merge' est paramétrée pour suivre la branche distante 'chore/explaining_how_to_merge' depuis 'origin'. ``` diff --git a/README.md b/README.md index 97ad87f471fe9f3b3acf099fa8a167fd91e0b59e..53eeec3809a970bf8b7d5796e14c5b0dca3781f1 100644 --- a/README.md +++ b/README.md @@ -65,10 +65,10 @@ If you just need access to API (to run the `ng serve` on top of it), you can run Otherwise, for the complete server (backend APIs + frontend interface), you can run: ```sh -./gradlew assemble && java -jar backend/build/libs/gpds.jar +./gradlew assemble && java -jar backend/build/libs/faidare.jar ``` -The server should then be accessible at http://localhost:8380/gpds-dev +The server should then be accessible at http://localhost:8380/faidare-dev ## Run frontend development server @@ -105,7 +105,7 @@ The details of this remote server are filled in the `bootstrap.yml` file. By default, it tries to connect to the remote server on http://localhost:8888 but it can of course be changed, or even configured via the `SPRING_CONFIG_URI` environment variable. -It will try to fetch the configuration for the application name `gpds`, and the default profile. +It will try to fetch the configuration for the application name `faidare`, and the default profile. If such a configuration is not found, it will then fallback to the local `application.yml` properties. To avoid running the Spring Cloud config server every time when developing the application, all the properties are still available in `application.yml` even if they are configured on the remote Spring Cloud server as well. diff --git a/backend/src/main/java/fr/inra/urgi/gpds/Application.java b/backend/src/main/java/fr/inra/urgi/faidare/Application.java similarity index 73% rename from backend/src/main/java/fr/inra/urgi/gpds/Application.java rename to backend/src/main/java/fr/inra/urgi/faidare/Application.java index 8b76ec2c86ad4bc0665f4fd52ea060f6fe936e77..75c1b74a4f90825eaa8175d679ad51e63267cea1 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/Application.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/Application.java @@ -1,19 +1,19 @@ -package fr.inra.urgi.gpds; +package fr.inra.urgi.faidare; -import fr.inra.urgi.gpds.config.GPDSProperties; +import fr.inra.urgi.faidare.config.FaidareProperties; import org.springframework.boot.SpringApplication; import org.springframework.boot.autoconfigure.SpringBootApplication; import org.springframework.boot.context.properties.EnableConfigurationProperties; import org.springframework.scheduling.annotation.EnableAsync; /** - * The main gpds Application + * The main faidare Application * * @author gcornut */ @SpringBootApplication @EnableAsync -@EnableConfigurationProperties(GPDSProperties.class) +@EnableConfigurationProperties(FaidareProperties.class) public class Application { public static void main(String[] args) { SpringApplication.run(Application.class, args); diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/BadRequestException.java b/backend/src/main/java/fr/inra/urgi/faidare/api/BadRequestException.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/api/BadRequestException.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/BadRequestException.java index f1f0646ed14b0b5367fe94c9fb32f33fda2f5827..cd0991dc2c9fd2cc7435cf4c4d9f556a0b4167ec 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/BadRequestException.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/BadRequestException.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.api; +package fr.inra.urgi.faidare.api; import org.springframework.http.HttpStatus; import org.springframework.web.bind.annotation.ResponseStatus; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/NotFoundException.java b/backend/src/main/java/fr/inra/urgi/faidare/api/NotFoundException.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/api/NotFoundException.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/NotFoundException.java index a12839da6480b150767398e1d18e3b5b72ac01f4..a6a49f20cc9970c455f99af49148fd4e97cfdeeb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/NotFoundException.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/NotFoundException.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.api; +package fr.inra.urgi.faidare.api; import org.springframework.http.HttpStatus; import org.springframework.web.bind.annotation.ResponseStatus; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiExceptionHandler.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiExceptionHandler.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiExceptionHandler.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiExceptionHandler.java index ae35d695d514003e1a263ef423d78f5c25537fdb..181d5b368694ec1626e12b1843d14722c4111d89 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiExceptionHandler.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiExceptionHandler.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.api.brapi.v1; - -import fr.inra.urgi.gpds.api.BadRequestException; -import fr.inra.urgi.gpds.api.NotFoundException; -import fr.inra.urgi.gpds.api.brapi.v1.exception.BrapiPaginationException; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiPagination; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiStatus; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; +package fr.inra.urgi.faidare.api.brapi.v1; + +import fr.inra.urgi.faidare.api.BadRequestException; +import fr.inra.urgi.faidare.api.NotFoundException; +import fr.inra.urgi.faidare.api.brapi.v1.exception.BrapiPaginationException; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiPagination; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiStatus; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; import org.springframework.http.HttpStatus; import org.springframework.http.ResponseEntity; import org.springframework.validation.BindException; @@ -26,7 +26,7 @@ import java.util.List; * * @author gcornut */ -@ControllerAdvice(basePackages = "fr.inra.urgi.gpds.api.brapi.v1") +@ControllerAdvice(basePackages = "fr.inra.urgi.faidare.api.brapi.v1") public class BrapiExceptionHandler { private static ResponseEntity<Object> createErrorResponse( diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiJSONViewHandler.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiJSONViewHandler.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiJSONViewHandler.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiJSONViewHandler.java index a7999650af96b284c22659bcda8a55aff7b56d85..f881453103b1a86d69065990d788a28f69fbf122 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiJSONViewHandler.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiJSONViewHandler.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import org.springframework.core.MethodParameter; import org.springframework.core.Ordered; import org.springframework.core.annotation.Order; @@ -20,7 +20,7 @@ import java.util.List; * * @author gcornut */ -@ControllerAdvice(basePackages = "fr.inra.urgi.gpds.api.brapi.v1") +@ControllerAdvice(basePackages = "fr.inra.urgi.faidare.api.brapi.v1") @Order(Ordered.HIGHEST_PRECEDENCE) public class BrapiJSONViewHandler extends AbstractMappingJacksonResponseBodyAdvice { diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/CallsController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/CallsController.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/CallsController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/CallsController.java index 9796212845c770a087eff1f25cfafb54faa097eb..b2bc193af41580435493cc50f6d36cd4fe0be74d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/CallsController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/CallsController.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; import com.google.common.collect.ImmutableSet; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiCall; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.CallVO; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiCall; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.CallVO; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/GermplasmController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/GermplasmController.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/GermplasmController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/GermplasmController.java index 45544b9610b9ad80b5f14a44afdba5965c310d40..3a50dff4f31314230d52ec2b68ca668d4e7c8670 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/GermplasmController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/GermplasmController.java @@ -1,22 +1,22 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.api.NotFoundException; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasm; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasmAttributeValueList; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiPedigree; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiProgeny; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiResponse; -import fr.inra.urgi.gpds.domain.criteria.GermplasmAttributeCriteria; -import fr.inra.urgi.gpds.domain.criteria.GermplasmGETSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.GermplasmPOSTSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.GermplasmSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.response.Pagination; -import fr.inra.urgi.gpds.repository.es.GermplasmAttributeRepository; -import fr.inra.urgi.gpds.service.es.GermplasmService; +import fr.inra.urgi.faidare.api.NotFoundException; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasm; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasmAttributeValueList; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiPedigree; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiProgeny; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiResponse; +import fr.inra.urgi.faidare.domain.criteria.GermplasmAttributeCriteria; +import fr.inra.urgi.faidare.domain.criteria.GermplasmGETSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.GermplasmPOSTSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.GermplasmSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.response.Pagination; +import fr.inra.urgi.faidare.repository.es.GermplasmAttributeRepository; +import fr.inra.urgi.faidare.service.es.GermplasmService; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.slf4j.Logger; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/LocationController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/LocationController.java similarity index 76% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/LocationController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/LocationController.java index 590c8c642f68ca4912516fcc6edcdad399ea4510..2cfec94ad00c7dac6a23f8f22bd161739b56a856 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/LocationController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/LocationController.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.api.NotFoundException; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiLocation; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiResponse; -import fr.inra.urgi.gpds.domain.criteria.LocationCriteria; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.LocationRepository; +import fr.inra.urgi.faidare.api.NotFoundException; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiLocation; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiResponse; +import fr.inra.urgi.faidare.domain.criteria.LocationCriteria; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.LocationRepository; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/ObservationVariableController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/ObservationVariableController.java similarity index 81% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/ObservationVariableController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/ObservationVariableController.java index fb989b1b4da11ee7add8bc39201f1565a3cc8a0e..e19b3f8e112e148b1ef33506590e6cd2f1cff221 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/ObservationVariableController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/ObservationVariableController.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.api.NotFoundException; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservationVariable; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiOntology; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiResponse; -import fr.inra.urgi.gpds.domain.criteria.ObservationVariableCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.repository.file.CropOntologyRepository; +import fr.inra.urgi.faidare.api.NotFoundException; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservationVariable; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiOntology; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiResponse; +import fr.inra.urgi.faidare.domain.criteria.ObservationVariableCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.repository.file.CropOntologyRepository; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import io.swagger.annotations.ApiParam; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/PhenotypeController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/PhenotypeController.java similarity index 75% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/PhenotypeController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/PhenotypeController.java index 8f00560df1d17e8e684de95fe6feb8fb6f618981..3aab607c9ed04fa95d046462bcc75a52dee191f1 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/PhenotypeController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/PhenotypeController.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.api.brapi.v1; - -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservationUnit; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.criteria.ObservationUnitCriteria; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.ObservationUnitRepository; +package fr.inra.urgi.faidare.api.brapi.v1; + +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservationUnit; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.criteria.ObservationUnitCriteria; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.ObservationUnitRepository; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/ProgramController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/ProgramController.java similarity index 77% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/ProgramController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/ProgramController.java index 9d1ad16de3e1891e71c64435ceb38f7c2af14f9b..8a892c8b057aad664d0c446adfab8cbbb550d4e9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/ProgramController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/ProgramController.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.api.NotFoundException; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiProgram; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiResponse; -import fr.inra.urgi.gpds.domain.criteria.ProgramCriteria; -import fr.inra.urgi.gpds.domain.data.ProgramVO; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.ProgramRepository; +import fr.inra.urgi.faidare.api.NotFoundException; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiProgram; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiResponse; +import fr.inra.urgi.faidare.domain.criteria.ProgramCriteria; +import fr.inra.urgi.faidare.domain.data.ProgramVO; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.ProgramRepository; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import io.swagger.annotations.ApiParam; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/StudyController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/StudyController.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/StudyController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/StudyController.java index ddf7320f73c8aa57e391b3fc3350e345e5896f60..39b2f72d759ff78a549af444893992a7a9f438f3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/StudyController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/StudyController.java @@ -1,26 +1,26 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; import com.google.common.collect.Lists; import com.google.common.collect.Sets; -import fr.inra.urgi.gpds.api.NotFoundException; -import fr.inra.urgi.gpds.domain.brapi.v1.data.*; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiResponse; -import fr.inra.urgi.gpds.domain.criteria.*; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationUnitVO; -import fr.inra.urgi.gpds.domain.data.study.StudyDetailVO; -import fr.inra.urgi.gpds.domain.data.study.StudySummaryVO; -import fr.inra.urgi.gpds.domain.data.variable.ObservationVariableVO; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.response.Pagination; -import fr.inra.urgi.gpds.repository.es.GermplasmRepository; -import fr.inra.urgi.gpds.repository.es.ObservationUnitRepository; -import fr.inra.urgi.gpds.repository.es.StudyRepository; -import fr.inra.urgi.gpds.repository.file.CropOntologyRepository; -import fr.inra.urgi.gpds.utils.StringFunctions; +import fr.inra.urgi.faidare.api.NotFoundException; +import fr.inra.urgi.faidare.domain.brapi.v1.data.*; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiResponse; +import fr.inra.urgi.faidare.domain.criteria.*; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationUnitVO; +import fr.inra.urgi.faidare.domain.data.study.StudyDetailVO; +import fr.inra.urgi.faidare.domain.data.study.StudySummaryVO; +import fr.inra.urgi.faidare.domain.data.variable.ObservationVariableVO; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.response.Pagination; +import fr.inra.urgi.faidare.repository.es.GermplasmRepository; +import fr.inra.urgi.faidare.repository.es.ObservationUnitRepository; +import fr.inra.urgi.faidare.repository.es.StudyRepository; +import fr.inra.urgi.faidare.repository.file.CropOntologyRepository; +import fr.inra.urgi.faidare.utils.StringFunctions; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.apache.commons.collections.CollectionUtils; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/TrialController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/TrialController.java similarity index 74% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/TrialController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/TrialController.java index 25a6e5bece1f76604235d4c551a81657755bcbdb..7a49b76c5c3a5d69d2daccd2106e41cb7d36f6ae 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/TrialController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/TrialController.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.api.brapi.v1; - -import fr.inra.urgi.gpds.api.NotFoundException; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiTrial; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiResponse; -import fr.inra.urgi.gpds.domain.criteria.TrialCriteria; -import fr.inra.urgi.gpds.domain.data.TrialVO; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.TrialRepository; +package fr.inra.urgi.faidare.api.brapi.v1; + +import fr.inra.urgi.faidare.api.NotFoundException; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiTrial; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiResponse; +import fr.inra.urgi.faidare.domain.criteria.TrialCriteria; +import fr.inra.urgi.faidare.domain.data.TrialVO; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.TrialRepository; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/exception/BrapiException.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/exception/BrapiException.java similarity index 54% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/exception/BrapiException.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/exception/BrapiException.java index 8a02af3922203d4c12039b6bafaa35d7c52e32b5..74f7732a3f9f9c1abe15bc59e5d838452dbafdcb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/exception/BrapiException.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/exception/BrapiException.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.api.brapi.v1.exception; +package fr.inra.urgi.faidare.api.brapi.v1.exception; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/exception/BrapiPaginationException.java b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/exception/BrapiPaginationException.java similarity index 69% rename from backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/exception/BrapiPaginationException.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/exception/BrapiPaginationException.java index 0a88195d9b77f200fb0995a21bc0daa4c8242e54..2ba358ad25427267dc3fa3735aa57dcaebde9597 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/brapi/v1/exception/BrapiPaginationException.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/brapi/v1/exception/BrapiPaginationException.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.api.brapi.v1.exception; +package fr.inra.urgi.faidare.api.brapi.v1.exception; -import fr.inra.urgi.gpds.api.BadRequestException; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiPagination; +import fr.inra.urgi.faidare.api.BadRequestException; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiPagination; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/DataDiscoveryController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/DataDiscoveryController.java similarity index 78% rename from backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/DataDiscoveryController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/DataDiscoveryController.java index 25579d0fd4b4cff79dfac0dd5176c28226152319..c249c80957e668934ae91aa6e2c5e5dcc8f2ddff 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/DataDiscoveryController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/DataDiscoveryController.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.api.gnpis.v1; - -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.datadiscovery.criteria.DataDiscoveryCriteriaImpl; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataSource; -import fr.inra.urgi.gpds.domain.datadiscovery.response.DataDiscoveryResponse; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.repository.es.DataDiscoveryRepository; -import fr.inra.urgi.gpds.repository.file.DataSourceRepository; -import fr.inra.urgi.gpds.utils.StringFunctions; +package fr.inra.urgi.faidare.api.gnpis.v1; + +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.datadiscovery.criteria.DataDiscoveryCriteriaImpl; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataSource; +import fr.inra.urgi.faidare.domain.datadiscovery.response.DataDiscoveryResponse; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.repository.es.DataDiscoveryRepository; +import fr.inra.urgi.faidare.repository.file.DataSourceRepository; +import fr.inra.urgi.faidare.utils.StringFunctions; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISExceptionHandler.java b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISExceptionHandler.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISExceptionHandler.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISExceptionHandler.java index a1849425ee9c00ae42578c2656a69914b4dd865b..96ee0096d79adb11411da9a7423c852cdfa3b95d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISExceptionHandler.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISExceptionHandler.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.api.gnpis.v1; +package fr.inra.urgi.faidare.api.gnpis.v1; -import fr.inra.urgi.gpds.api.BadRequestException; -import fr.inra.urgi.gpds.api.NotFoundException; +import fr.inra.urgi.faidare.api.BadRequestException; +import fr.inra.urgi.faidare.api.NotFoundException; import org.springframework.http.HttpStatus; import org.springframework.http.ResponseEntity; import org.springframework.validation.BindException; @@ -18,7 +18,7 @@ import org.springframework.web.bind.annotation.ExceptionHandler; * * @author gcornut */ -@ControllerAdvice(basePackages = "fr.inra.urgi.gpds.api.gnpis.v1") +@ControllerAdvice(basePackages = "fr.inra.urgi.faidare.api.gnpis.v1") public class GnpISExceptionHandler { /** diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISGermplasmController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISGermplasmController.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISGermplasmController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISGermplasmController.java index 7a0755303d0f9fe2f166f408456ae23a3e1f90f6..5b32adbbc07cb46ef6bfffc9db29dba362e6458d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISGermplasmController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISGermplasmController.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.api.gnpis.v1; +package fr.inra.urgi.faidare.api.gnpis.v1; import com.google.common.base.Strings; -import fr.inra.urgi.gpds.api.BadRequestException; -import fr.inra.urgi.gpds.api.NotFoundException; -import fr.inra.urgi.gpds.domain.criteria.GermplasmGETSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.GermplasmPOSTSearchCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.service.es.GermplasmService; +import fr.inra.urgi.faidare.api.BadRequestException; +import fr.inra.urgi.faidare.api.NotFoundException; +import fr.inra.urgi.faidare.domain.criteria.GermplasmGETSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.GermplasmPOSTSearchCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.service.es.GermplasmService; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISJSONViewHandler.java b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISJSONViewHandler.java similarity index 85% rename from backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISJSONViewHandler.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISJSONViewHandler.java index 41e14ce708c47e7ab02907706602de2332cd82ed..b7836a4b24c03952c3ccf9929a736f2886381268 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISJSONViewHandler.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISJSONViewHandler.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.api.gnpis.v1; +package fr.inra.urgi.faidare.api.gnpis.v1; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import org.springframework.core.MethodParameter; import org.springframework.http.MediaType; import org.springframework.http.converter.json.MappingJacksonValue; @@ -12,7 +12,7 @@ import org.springframework.web.servlet.mvc.method.annotation.AbstractMappingJack /** * @author gcornut */ -@ControllerAdvice(basePackages = "fr.inra.urgi.gpds.api.gnpis.v1") +@ControllerAdvice(basePackages = "fr.inra.urgi.faidare.api.gnpis.v1") public class GnpISJSONViewHandler extends AbstractMappingJacksonResponseBodyAdvice { @Override diff --git a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/XRefDocumentController.java b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/XRefDocumentController.java similarity index 81% rename from backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/XRefDocumentController.java rename to backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/XRefDocumentController.java index 1ae63a8af8a418fd9bd62280b4d94500ed11890b..95bdc960eb7c284d6ca782f5fa994fa13ee4a9a8 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/api/gnpis/v1/XRefDocumentController.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/api/gnpis/v1/XRefDocumentController.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.api.gnpis.v1; +package fr.inra.urgi.faidare.api.gnpis.v1; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentSearchCriteria; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentVO; -import fr.inra.urgi.gpds.repository.es.XRefDocumentRepository; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentSearchCriteria; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentVO; +import fr.inra.urgi.faidare.repository.es.XRefDocumentRepository; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/config/ElasticSearchConfig.java b/backend/src/main/java/fr/inra/urgi/faidare/config/ElasticSearchConfig.java similarity index 97% rename from backend/src/main/java/fr/inra/urgi/gpds/config/ElasticSearchConfig.java rename to backend/src/main/java/fr/inra/urgi/faidare/config/ElasticSearchConfig.java index 90d5dbbc01551227fa5636aeb8a3c939d637a514..8d4901f956946b6e21a6b74d978d5b44e72557ca 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/config/ElasticSearchConfig.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/config/ElasticSearchConfig.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.config; +package fr.inra.urgi.faidare.config; import org.apache.http.HttpHost; import org.apache.http.impl.nio.reactor.IOReactorConfig; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/config/GPDSProperties.java b/backend/src/main/java/fr/inra/urgi/faidare/config/FaidareProperties.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/config/GPDSProperties.java rename to backend/src/main/java/fr/inra/urgi/faidare/config/FaidareProperties.java index 93a8080d01966d74988d533a7fa69418dec1a969..6ee8ae90bdb088066e6183dcaa8954c97e549f38 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/config/GPDSProperties.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/config/FaidareProperties.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.config; +package fr.inra.urgi.faidare.config; import org.springframework.boot.context.properties.ConfigurationProperties; @@ -9,8 +9,8 @@ import javax.validation.constraints.NotBlank; * * @author gcornut */ -@ConfigurationProperties(prefix = "gpds") -public class GPDSProperties { +@ConfigurationProperties(prefix = "faidare") +public class FaidareProperties { @NotBlank private String elasticsearchAliasTemplate; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/config/JSONConfig.java b/backend/src/main/java/fr/inra/urgi/faidare/config/JSONConfig.java similarity index 97% rename from backend/src/main/java/fr/inra/urgi/gpds/config/JSONConfig.java rename to backend/src/main/java/fr/inra/urgi/faidare/config/JSONConfig.java index 147eab64cba92bf723d3df7cc1875e7db03edd12..458bec1da50ff19b1d3eac10675dc3c327966ed9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/config/JSONConfig.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/config/JSONConfig.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.config; +package fr.inra.urgi.faidare.config; import com.fasterxml.jackson.databind.DeserializationFeature; import com.fasterxml.jackson.databind.MapperFeature; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/config/RestClientConfig.java b/backend/src/main/java/fr/inra/urgi/faidare/config/RestClientConfig.java similarity index 97% rename from backend/src/main/java/fr/inra/urgi/gpds/config/RestClientConfig.java rename to backend/src/main/java/fr/inra/urgi/faidare/config/RestClientConfig.java index 4b5b19ded35bd1bbb48b94b89971ab7321c60875..51fc54031b6555d58a3dc188f90841deebeb7028 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/config/RestClientConfig.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/config/RestClientConfig.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.config; +package fr.inra.urgi.faidare.config; import org.springframework.beans.factory.annotation.Qualifier; import org.springframework.context.annotation.Bean; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/config/SecurityConfig.java b/backend/src/main/java/fr/inra/urgi/faidare/config/SecurityConfig.java similarity index 97% rename from backend/src/main/java/fr/inra/urgi/gpds/config/SecurityConfig.java rename to backend/src/main/java/fr/inra/urgi/faidare/config/SecurityConfig.java index cefe4bae37c6cc888313b5e73b0f837f7ceca88d..25b71df768766c7765cc196d2f4bc1d148bd8540 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/config/SecurityConfig.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/config/SecurityConfig.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.config; +package fr.inra.urgi.faidare.config; import org.springframework.context.annotation.Configuration; import org.springframework.security.config.annotation.web.builders.HttpSecurity; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/config/SwaggerConfig.java b/backend/src/main/java/fr/inra/urgi/faidare/config/SwaggerConfig.java similarity index 93% rename from backend/src/main/java/fr/inra/urgi/gpds/config/SwaggerConfig.java rename to backend/src/main/java/fr/inra/urgi/faidare/config/SwaggerConfig.java index eee191bfe8e26912517f305fe2aace348f3b78ad..cfa2aad25a3a99b09833ab0b860a71287d265d3d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/config/SwaggerConfig.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/config/SwaggerConfig.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.config; +package fr.inra.urgi.faidare.config; import org.springframework.context.annotation.Bean; import org.springframework.context.annotation.Configuration; @@ -18,7 +18,7 @@ public class SwaggerConfig { @Bean public Docket api() { return new Docket(DocumentationType.SWAGGER_2).select() - .apis(RequestHandlerSelectors.basePackage("fr.inra.urgi.gpds.api")) + .apis(RequestHandlerSelectors.basePackage("fr.inra.urgi.faidare.api")) .paths(PathSelectors.regex("/.*")) .build(); } diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/JSONView.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/JSONView.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/JSONView.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/JSONView.java index 0dae0a74996e4917d49d4621be45e7be3376d4d9..37a643806a2e094a31e265c2d0231ff1f30196b8 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/JSONView.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/JSONView.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain; +package fr.inra.urgi.faidare.domain; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; /** * Collection of Jack JSON views used to annotate Java bean properties using {@link JsonView} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmAttributeCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmAttributeCriteria.java similarity index 75% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmAttributeCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmAttributeCriteria.java index c6ef8f14e379695393a372d839c85c439d6671e2..eeb03593ecba586128fb99884e5e2b1133139020 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmAttributeCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmAttributeCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmAttributeListCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmAttributeListCriteria.java similarity index 73% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmAttributeListCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmAttributeListCriteria.java index 07640cfc073dcdb1e0d57045be482add7c1fbc58..01ba6513e9641381a8e99e8c78155449fefd961b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmAttributeListCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmAttributeListCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmGETSearchCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmGETSearchCriteria.java similarity index 81% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmGETSearchCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmGETSearchCriteria.java index 335975ba083b6a7e9fe51982b777a18bc3dae6f2..398efdc5162ba5b10859c0d3a80b87e76e4cce40 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmGETSearchCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmGETSearchCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmPOSTSearchCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmPOSTSearchCriteria.java similarity index 87% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmPOSTSearchCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmPOSTSearchCriteria.java index b66c0cef9215bd65a66bb79941b25e72e862d9f1..1b3d82911a9edd1bd3cfd17c0e365e2e281392cf 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiGermplasmPOSTSearchCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiGermplasmPOSTSearchCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiLocationCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiLocationCriteria.java similarity index 74% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiLocationCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiLocationCriteria.java index f5e33dec77c60bdb333fe6dbd2f02e0090183a78..e61ab3e39648b49a364bbe93f2125d9216fc8658 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiLocationCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiLocationCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiObservationUnitCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiObservationUnitCriteria.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiObservationUnitCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiObservationUnitCriteria.java index 3bd40198099fba172b1ef3ee0c7c3389b4507de8..a0666582c439436d54f84a19d94d585d5c0e6947 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiObservationUnitCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiObservationUnitCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.List; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiObservationVariableCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiObservationVariableCriteria.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiObservationVariableCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiObservationVariableCriteria.java index 9b3ea0a6115b193a9c3c4f02012eddadd1e9c12d..a5d90e66e76ead70d5b6a81191c7fddd189d2002 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiObservationVariableCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiObservationVariableCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiPaginationCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiPaginationCriteria.java similarity index 76% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiPaginationCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiPaginationCriteria.java index cbf89336388d5294f54a5c15745e040336187bf3..caac92a7c5ba040161199c52d375853118aaed9b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiPaginationCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiPaginationCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiProgramCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiProgramCriteria.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiProgramCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiProgramCriteria.java index a7a8af26eaa57b37b1726f73e273ab36eec72529..ea8837556d717da5cd0cff4a0986f4e7a4a6c36f 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiProgramCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiProgramCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiSortCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiSortCriteria.java similarity index 68% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiSortCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiSortCriteria.java index 33747e9251f381e8fb424d51904ca8db1ba02a42..ccb49dd6f22d1de638921d833b75b45cbb9745b9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiSortCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiSortCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudyCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudyCriteria.java similarity index 87% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudyCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudyCriteria.java index a9ab2d69625ce7e0a45829d14aabeff06c3ccaa6..8e592fd699c5e9232f3709acdeff662ef8898eee 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudyCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudyCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudyObservationUnitCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudyObservationUnitCriteria.java similarity index 73% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudyObservationUnitCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudyObservationUnitCriteria.java index 1996d79c90387a6028b44c92a0e9e0a5a65f6bb0..52e19f2c09840e2d3b3222471f376db086f4b0ac 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudyObservationUnitCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudyObservationUnitCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudySearchCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudySearchCriteria.java similarity index 83% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudySearchCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudySearchCriteria.java index 8135ac821500060402333084365464631c02cce7..0043f99f074c5192a248abe4f0c34235f0de7554 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiStudySearchCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiStudySearchCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiTrialCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiTrialCriteria.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiTrialCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiTrialCriteria.java index b147b40e1815fce568f7d170565e2d1552de6609..4ce30335614ff748de139efa4d824d9f9a9fe094 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/criteria/BrapiTrialCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/criteria/BrapiTrialCriteria.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.criteria; +package fr.inra.urgi.faidare.domain.brapi.v1.criteria; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiAdditionalInfo.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiAdditionalInfo.java similarity index 92% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiAdditionalInfo.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiAdditionalInfo.java index 047c156af79b6b48383961f9123d6699176d9294..a1f7074ab309c406052750217d7d2470f7b1a8b2 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiAdditionalInfo.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiAdditionalInfo.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonAnyGetter; import com.fasterxml.jackson.annotation.JsonAnySetter; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.io.Serializable; import java.util.HashMap; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiCall.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiCall.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiCall.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiCall.java index 056ecd55dc9f774f2900e05f7b4a69539f6ee7f3..d5f0c33fb2d101cf5edd5c47e249aa90f2e589e6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiCall.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiCall.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiContact.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiContact.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiContact.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiContact.java index d2163f411a7867cbae9caf432bea3ee5d85c31f2..ef4d398c024c085bfc844107cde29432d83be7d4 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiContact.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiContact.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasm.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasm.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasm.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasm.java index 48eaea5dddc86e7ab167f0f648c9d5dd98a38fb5..c798100b21536dcb9c4287fe830e5a7c122a2605 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasm.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasm.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmAttributeValue.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmAttributeValue.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmAttributeValue.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmAttributeValue.java index 2bae6a7957b3314fe96c9b07d28a944ca17acfbf..5d1d946527153ff5d1da61532f3863acece6242e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmAttributeValue.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmAttributeValue.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.Date; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmAttributeValueList.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmAttributeValueList.java similarity index 77% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmAttributeValueList.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmAttributeValueList.java index deee6b48185178d1bb9d231c123396257bae3029..b828aa22226d02961b65fea6722786c178dcecdc 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmAttributeValueList.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmAttributeValueList.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmDonor.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmDonor.java similarity index 78% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmDonor.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmDonor.java index 6a10909a1734ef1b7f218e008b33e62333c5cf07..84d9f16c8e0e83e0764642b4c346de0def016475 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmDonor.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmDonor.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmTaxonSource.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmTaxonSource.java similarity index 73% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmTaxonSource.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmTaxonSource.java index afbcb457a7c53071473757e18494ed22b7a9db0f..4977846e61965623d2f0f4e3c189e1555adf1c77 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiGermplasmTaxonSource.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiGermplasmTaxonSource.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiLocation.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiLocation.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiLocation.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiLocation.java index 77f866ed0515de0731347249817e4128407d318d..9a1a35a7cd68262ad81faa0ec7e4df0b11e34550 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiLocation.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiLocation.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiMethod.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiMethod.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiMethod.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiMethod.java index 92e3a57c91c7e93ae9c6590367eb3169a0142049..c00d9dbd0691f4b2373b53d9441e52d9b1f51cd3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiMethod.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiMethod.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservation.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservation.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservation.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservation.java index 799710616715e981bef09ae37180060c7193d7af..96d45884585ab3ebd2f03cd70dd899fedf8da1db 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservation.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservation.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonFormat; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.Date; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnit.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnit.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnit.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnit.java index b2e28cc713a4c7db681851f0f4ac267da0959b94..2eaaae70b69dcc84f14e5be13370c9e12f055754 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnit.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnit.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnitTreatment.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnitTreatment.java similarity index 73% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnitTreatment.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnitTreatment.java index 8ba35b2550054310c15ca1aa700cf98a0e75ea12..4c43bfe40188fee50b4cec0235e024a68158a3d3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnitTreatment.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnitTreatment.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnitXRef.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnitXRef.java similarity index 72% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnitXRef.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnitXRef.java index f6d865909a9d1f1d829a97bed06d902bc5b34352..6a7bd8713eac6f8676940041475551fb0aae7625 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationUnitXRef.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationUnitXRef.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationVariable.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationVariable.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationVariable.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationVariable.java index 6bb19b99b50c340302240c42664437e5f0247531..7a5753dd950302567976150212a55da1382f4d0c 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiObservationVariable.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiObservationVariable.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiOntology.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiOntology.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiOntology.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiOntology.java index a01e225f09ab1ae6298feb84fac9ca64e0f0a0b6..0f1c8186a297b8512517885887620042c2681884 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiOntology.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiOntology.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiOntologyLink.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiOntologyLink.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiOntologyLink.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiOntologyLink.java index 19dfe1b3627192850464a111412d5232ee5307a1..2ac55f317f1fa402cbed80f952dda3aba320de43 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiOntologyLink.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiOntologyLink.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiParentProgeny.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiParentProgeny.java similarity index 76% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiParentProgeny.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiParentProgeny.java index 94ef6ef3391d288a84e6f8545f0d6201c32307cb..67d8d5a24993fb1d35710f6b50b1dd42b7c138de 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiParentProgeny.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiParentProgeny.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; public interface BrapiParentProgeny { diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiPedigree.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiPedigree.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiPedigree.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiPedigree.java index 863ef0662305e7559790ba819f2db5a31e9bd959..87a63f60482b6c61b5c49190bf6164f058f2e8bd 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiPedigree.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiPedigree.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiProgeny.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiProgeny.java similarity index 80% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiProgeny.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiProgeny.java index e477e400788ad2d48f81afdda7c9eb4d9916a2b3..66bfc823b4051beb17dcac61f62549a940139fc3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiProgeny.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiProgeny.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiProgram.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiProgram.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiProgram.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiProgram.java index b19b2ad8efaa39becfcf11887d17b61988fe37ac..952b9b12e32515193d9f6a043117f17440ce8cfe 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiProgram.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiProgram.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiScale.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiScale.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiScale.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiScale.java index 9e83e8a9710687265bd5b1f13bffa28222d6d4e9..3376e2e3bcea1a4513a6fadb9a6af76940f4b58c 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiScale.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiScale.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiScaleValidValue.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiScaleValidValue.java similarity index 87% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiScaleValidValue.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiScaleValidValue.java index 4113fd1a22b34c0b89646982a7fca3947d303d7f..e38ed0fcc45f871a5a38b3080dce7d1b98f8eef4 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiScaleValidValue.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiScaleValidValue.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiSibling.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiSibling.java similarity index 71% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiSibling.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiSibling.java index 4efeac5cbfa68f4a9e6bac7ab3f62ce6baa5ce11..282361731260d07ca3cda190c73872aa337db1cb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiSibling.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiSibling.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; public interface BrapiSibling { diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudy.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudy.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudy.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudy.java index 37805b8a617cfd30477a97d67906e15bf9ed96b4..aacd23722d863c53059f0c0d59be034f94753c12 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudy.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudy.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonFormat; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.Date; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyDataLink.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyDataLink.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyDataLink.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyDataLink.java index 7ec697e93a68155f7f35658bd6f89b30792c6618..dc6eca031e32ee8ac79570f9dc7d0e40677503c3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyDataLink.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyDataLink.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyDetail.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyDetail.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyDetail.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyDetail.java index 40a89d7e276c21fba38414a19e3cb769b9f4bfcd..4a41e83e385c590112d676507bde643682109842 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyDetail.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyDetail.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyLastUpdate.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyLastUpdate.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyLastUpdate.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyLastUpdate.java index 746d6563b18577c9f635235ed72f8c22f965a1eb..060f7cd7c251ac912f74021e0535a209a174c1f7 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudyLastUpdate.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudyLastUpdate.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudySummary.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudySummary.java similarity index 83% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudySummary.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudySummary.java index c616245d912873f12268d4caf2f4333c64a719d1..08ada70747e998a5126fd4233d812896762df4f5 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiStudySummary.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiStudySummary.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrait.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrait.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrait.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrait.java index 0513211ddebb074dbe6ea28d2e3b9009eb3ce920..9473924c19c0d75c03c6b5304153b6165c8ab77b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrait.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrait.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrial.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrial.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrial.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrial.java index 90c5f8413827d629d14870abd6b1057a77cd9939..f88dd346a9cd928ca122dc2a9dc2f2b4c7b28f52 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrial.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrial.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonFormat; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.Date; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrialDatasetAuthorship.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrialDatasetAuthorship.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrialDatasetAuthorship.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrialDatasetAuthorship.java index 9dd709c2635835981abc3ab0d492fa3bed47d686..fc62675fc6d836c6833b3296cda9a40cac08991e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrialDatasetAuthorship.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrialDatasetAuthorship.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrialStudy.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrialStudy.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrialStudy.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrialStudy.java index c3769d3ae3b0a2f287212f96cb59b7ba8b33441a..6c50078c0b9a697146d000470ee2305cbc08e752 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/BrapiTrialStudy.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/BrapiTrialStudy.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/HasBrapiDocumentationURL.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/HasBrapiDocumentationURL.java similarity index 72% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/HasBrapiDocumentationURL.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/HasBrapiDocumentationURL.java index f8ea9e43aec9baa02952fba3ae8b96a24731a659..bb0379891d47010c8c835e2c935d9d4fb8721728 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/data/HasBrapiDocumentationURL.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/data/HasBrapiDocumentationURL.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.data; +package fr.inra.urgi.faidare.domain.brapi.v1.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * Has BrAPI v1.3 documentationUrl field diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/package-info.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/package-info.java similarity index 81% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/package-info.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/package-info.java index f55dda01f84982dad837fd311a5b02656239689a..5f4c903b534420326a13001140b9180db142a106 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/package-info.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/package-info.java @@ -4,4 +4,4 @@ * * @author gcornut */ -package fr.inra.urgi.gpds.domain.brapi.v1; +package fr.inra.urgi.faidare.domain.brapi.v1; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiData.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiData.java similarity index 67% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiData.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiData.java index a5b634b1ced9521817f758289cb7d81b5d94cf15..ba74640b054e92dff18953ac6185d3430d7e00ae 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiData.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiData.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.response; +package fr.inra.urgi.faidare.domain.brapi.v1.response; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiListResponse.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiListResponse.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiListResponse.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiListResponse.java index 8d0fc74ef8e9b3cb21e1ed679f95accb21fa158d..c67194a15df16b558d13d5f807cfce4c3e01c8c6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiListResponse.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiListResponse.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.response; +package fr.inra.urgi.faidare.domain.brapi.v1.response; /** * bean for general paginated response structure for breeding API diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiMetadata.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiMetadata.java similarity index 78% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiMetadata.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiMetadata.java index 57c0bf6d59ae6293e35a571e102e13783177d63f..fde394084d30c6b5b621db2db8e0bb580004aa52 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiMetadata.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiMetadata.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.response; +package fr.inra.urgi.faidare.domain.brapi.v1.response; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiPagination.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiPagination.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiPagination.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiPagination.java index 91a76f89487498b75c62faa8436a5fd20b64f94b..33fb0fb2feac3b5b071dc6d27ff74c90defb45ca 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiPagination.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiPagination.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.response; +package fr.inra.urgi.faidare.domain.brapi.v1.response; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiResponse.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiResponse.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiResponse.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiResponse.java index 78708965e85974018545568925fc8b5706582bf6..b95cf714dca413c587c50c0839931e33d48f8397 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiResponse.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiResponse.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.response; +package fr.inra.urgi.faidare.domain.brapi.v1.response; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * bean for general response structure for breeding API diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiStatus.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiStatus.java similarity index 70% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiStatus.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiStatus.java index 7925672149a45a23ffdc9efbba3541b4e00a1a1c..8ec5b05d266c8bc15560a931ac527baf68602a3d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/brapi/v1/response/BrapiStatus.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/brapi/v1/response/BrapiStatus.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.brapi.v1.response; +package fr.inra.urgi.faidare.domain.brapi.v1.response; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmAttributeCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmAttributeCriteria.java similarity index 64% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmAttributeCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmAttributeCriteria.java index 237f1b85859e7ceddfe6a60e02b2d81377cdb621..7aaa5f60148530d5c179e17eed93d79b3181188e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmAttributeCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmAttributeCriteria.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.domain.criteria; +package fr.inra.urgi.faidare.domain.criteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiGermplasmAttributeCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmAttributeValueListVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiGermplasmAttributeCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmAttributeValueListVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmAttributeListCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmAttributeListCriteria.java similarity index 56% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmAttributeListCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmAttributeListCriteria.java index 4916fbb0716065b7c2023feebe8d46189c309626..74ceec99dd031ad0f7ff3036a37963461bcbb8a3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmAttributeListCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmAttributeListCriteria.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.domain.criteria; +package fr.inra.urgi.faidare.domain.criteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiGermplasmAttributeListCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmAttributeValueListVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiGermplasmAttributeListCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmAttributeValueListVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmGETSearchCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmGETSearchCriteria.java similarity index 71% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmGETSearchCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmGETSearchCriteria.java index 6a1050a385bf7b2ff78d5adc2664fa1f7f7bab3e..02274c9fb62b6ea7d8f041d0157a1d3535889cfc 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmGETSearchCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmGETSearchCriteria.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.domain.criteria; +package fr.inra.urgi.faidare.domain.criteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiGermplasmGETSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiGermplasmGETSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmPOSTSearchCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmPOSTSearchCriteria.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmPOSTSearchCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmPOSTSearchCriteria.java index 18676fd55a3079706e855fb8c5cbe86da6413731..55d6dd1aec505d8129ea42466d0831aaad719734 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmPOSTSearchCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmPOSTSearchCriteria.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.domain.criteria; +package fr.inra.urgi.faidare.domain.criteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiGermplasmPOSTSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiGermplasmPOSTSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmSearchCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmSearchCriteria.java similarity index 62% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmSearchCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmSearchCriteria.java index 0ed4a83ce3948bbc525c5ff3682ab22aa5dab883..897999f0d1b59e0a4b54ca91be4a6295ee93f93c 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/GermplasmSearchCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/GermplasmSearchCriteria.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.criteria; +package fr.inra.urgi.faidare.domain.criteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; /** * Regroups {@link GermplasmGETSearchCriteria} & {@link GermplasmPOSTSearchCriteria} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/LocationCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/LocationCriteria.java similarity index 50% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/LocationCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/LocationCriteria.java index 246039950ae2475c2813c68a5dfdc33d5cc4e6a8..c641c3a8294bff336ba432383a4ed14f9d657a76 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/LocationCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/LocationCriteria.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.domain.criteria; +package fr.inra.urgi.faidare.domain.criteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiLocationCriteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiPaginationCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.LocationVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiLocationCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiPaginationCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.LocationVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ObservationUnitCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ObservationUnitCriteria.java similarity index 85% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ObservationUnitCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ObservationUnitCriteria.java index a8a9f3c5da88d1d85373bbd7ce0ad658830d5452..b8d32310f56954eb0db09e03ee224cd8bdbfa99e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ObservationUnitCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ObservationUnitCriteria.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.domain.criteria; - -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiObservationUnitCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationUnitVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.QueryType; +package fr.inra.urgi.faidare.domain.criteria; + +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiObservationUnitCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationUnitVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.QueryType; import org.elasticsearch.index.query.RangeQueryBuilder; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ObservationVariableCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ObservationVariableCriteria.java similarity index 72% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ObservationVariableCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ObservationVariableCriteria.java index 97ecf2b6c5c78a6c01593753e187f78bc38a027f..2544e91398b255a255d9cd435f41be5544ecca68 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ObservationVariableCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ObservationVariableCriteria.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.criteria; +package fr.inra.urgi.faidare.domain.criteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiObservationVariableCriteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiPaginationCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiObservationVariableCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiPaginationCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ProgramCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ProgramCriteria.java similarity index 74% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ProgramCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ProgramCriteria.java index fbb7387345b87c4d084ec69426b90b788d915cbd..be3c809f8485bca83b6aeb63ea32dab2c65607d3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/ProgramCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/ProgramCriteria.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.domain.criteria; - -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiPaginationCriteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiProgramCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.data.ProgramVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +package fr.inra.urgi.faidare.domain.criteria; + +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiPaginationCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiProgramCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.data.ProgramVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudyCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudyCriteria.java new file mode 100644 index 0000000000000000000000000000000000000000..ccb1bfc17f2139b0833d1c1be1f0f119f7ff7b62 --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudyCriteria.java @@ -0,0 +1,9 @@ +package fr.inra.urgi.faidare.domain.criteria; + +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; + +/** + * @author gcornut + */ +public interface StudyCriteria extends PaginationCriteria { +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudyObservationUnitCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudyObservationUnitCriteria.java similarity index 78% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudyObservationUnitCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudyObservationUnitCriteria.java index 0d461e2fc6fe2693a05fe19fa6523dd3eca07504..8e670e74d0fd7a15834d91f94205651b764da7a3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudyObservationUnitCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudyObservationUnitCriteria.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.criteria; +package fr.inra.urgi.faidare.domain.criteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiStudyObservationUnitCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiStudyObservationUnitCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudySearchCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudySearchCriteria.java similarity index 65% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudySearchCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudySearchCriteria.java index 21130ba85aee7560b48014d02ea04c95332f504e..d511f6316860b961c6219f9bd7f4407769627603 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudySearchCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudySearchCriteria.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.domain.criteria; - -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiPaginationCriteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiSortCriteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiStudySearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.SortCriteria; -import fr.inra.urgi.gpds.domain.data.study.StudySummaryVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +package fr.inra.urgi.faidare.domain.criteria; + +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiPaginationCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiSortCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiStudySearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.SortCriteria; +import fr.inra.urgi.faidare.domain.data.study.StudySummaryVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudySummaryCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudySummaryCriteria.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudySummaryCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudySummaryCriteria.java index ab80b192ab0ec8292b6fd568ae0b2b3f9bb29ae1..9bd84d296fc292b879d3456a344f5234bd780fa5 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudySummaryCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/StudySummaryCriteria.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.domain.criteria; - -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiPaginationCriteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiSortCriteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiStudyCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.criteria.base.SortCriteria; -import fr.inra.urgi.gpds.domain.data.study.StudySummaryVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.NoDocumentMapping; +package fr.inra.urgi.faidare.domain.criteria; + +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiPaginationCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiSortCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiStudyCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.criteria.base.SortCriteria; +import fr.inra.urgi.faidare.domain.data.study.StudySummaryVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.NoDocumentMapping; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/TrialCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/TrialCriteria.java similarity index 69% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/TrialCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/TrialCriteria.java index 01f20afcd9a277f8da9c08109c442a6d78445a09..608741955e313f9e518b1d2d22c748608d2343d1 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/TrialCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/TrialCriteria.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.domain.criteria; - -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiPaginationCriteria; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiTrialCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.criteria.base.SortCriteria; -import fr.inra.urgi.gpds.domain.data.TrialVO; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.NoDocumentMapping; +package fr.inra.urgi.faidare.domain.criteria; + +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiPaginationCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiTrialCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.criteria.base.SortCriteria; +import fr.inra.urgi.faidare.domain.data.TrialVO; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.NoDocumentMapping; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationCriteria.java similarity index 57% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationCriteria.java index 40f39b649d06e112970df141963cea7210208466..54f4655733ff51bbf173e1653eb48d33fb1374a1 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationCriteria.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.criteria.base; +package fr.inra.urgi.faidare.domain.criteria.base; -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiPaginationCriteria; +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiPaginationCriteria; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationCriteriaImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationCriteriaImpl.java similarity index 92% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationCriteriaImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationCriteriaImpl.java index fb321a4a5410fec229346734fda605775af8e1ab..939ddbd44336517104971c630230e21ebdfce725 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationCriteriaImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationCriteriaImpl.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.criteria.base; +package fr.inra.urgi.faidare.domain.criteria.base; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.NoDocumentMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.NoDocumentMapping; import javax.validation.constraints.Max; import javax.validation.constraints.Min; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationMaxResultValidator.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationMaxResultValidator.java similarity index 96% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationMaxResultValidator.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationMaxResultValidator.java index 5bb9cfe264353dab32703c1fe11d56393540f24a..1f7f00962825ff4b1296e32c16fdaf22bc4b6ef0 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationMaxResultValidator.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationMaxResultValidator.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.criteria.base; +package fr.inra.urgi.faidare.domain.criteria.base; import javax.validation.ConstraintValidator; import javax.validation.ConstraintValidatorContext; diff --git a/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/SortCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/SortCriteria.java new file mode 100644 index 0000000000000000000000000000000000000000..d6f77cc466a03e8c339176d4f4a7c37c8a6c021c --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/SortCriteria.java @@ -0,0 +1,9 @@ +package fr.inra.urgi.faidare.domain.criteria.base; + +import fr.inra.urgi.faidare.domain.brapi.v1.criteria.BrapiSortCriteria; + +/** + * @author gcornut + */ +public interface SortCriteria extends BrapiSortCriteria { +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/ValidPagination.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/ValidPagination.java similarity index 93% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/ValidPagination.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/ValidPagination.java index 4aa3535f619c5d28a5889125d8a32306500295cd..230976133a197d90849d192bdd2e344b465649a6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/ValidPagination.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/criteria/base/ValidPagination.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.criteria.base; +package fr.inra.urgi.faidare.domain.criteria.base; import javax.validation.Constraint; import javax.validation.Payload; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/CallVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/CallVO.java similarity index 77% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/CallVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/CallVO.java index 9fbb1a3ee162df076dcf74e80d66c7649dd73233..6fd6838f47fb5a948ceac5c3b2dfec743798dfc5 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/CallVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/CallVO.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.domain.data; +package fr.inra.urgi.faidare.domain.data; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiCall; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiCall; import java.util.Set; -import static fr.inra.urgi.gpds.api.brapi.v1.CallsController.DEFAULT_BRAPI_VERSIONS; -import static fr.inra.urgi.gpds.api.brapi.v1.CallsController.DEFAULT_DATA_TYPES; +import static fr.inra.urgi.faidare.api.brapi.v1.CallsController.DEFAULT_BRAPI_VERSIONS; +import static fr.inra.urgi.faidare.api.brapi.v1.CallsController.DEFAULT_DATA_TYPES; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/ContactVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/ContactVO.java similarity index 92% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/ContactVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/ContactVO.java index ad42ef6d71bf41f4c2df5cd1b22176299bd258df..14a1c1ea4aa2920f8574fd5b69bca5074efd3955 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/ContactVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/ContactVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data; +package fr.inra.urgi.faidare.domain.data; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiContact; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiContact; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/GnpISInternal.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/GnpISInternal.java similarity index 85% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/GnpISInternal.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/GnpISInternal.java index 1bdc77a9dc4e852c527f44e110692af73805b44a..ce877f5b7375b76b8d0df75f6c64cbd5820a653d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/GnpISInternal.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/GnpISInternal.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.data; +package fr.inra.urgi.faidare.domain.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.io.Serializable; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/LocationVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/LocationVO.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/LocationVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/LocationVO.java index 010ebf16c32c9afeedb2f410945211732b624ecf..f8dea56d760b22a1da8f701eda6b91b8be562b5f 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/LocationVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/LocationVO.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.domain.data; - -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiAdditionalInfo; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiLocation; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURL; -import fr.inra.urgi.gpds.domain.jsonld.data.IncludedInDataCatalog; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; +package fr.inra.urgi.faidare.domain.data; + +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiAdditionalInfo; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiLocation; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURL; +import fr.inra.urgi.faidare.domain.jsonld.data.IncludedInDataCatalog; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/ProgramVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/ProgramVO.java similarity index 86% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/ProgramVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/ProgramVO.java index d96141e5b5306e57c9613a293499eb3efe69ff8e..07584931139e3f87e52379b05365392ce7bef048 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/ProgramVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/ProgramVO.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.domain.data; +package fr.inra.urgi.faidare.domain.data; import com.fasterxml.jackson.annotation.JsonSetter; import com.fasterxml.jackson.annotation.Nulls; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiProgram; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURL; -import fr.inra.urgi.gpds.domain.jsonld.data.IncludedInDataCatalog; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiProgram; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURL; +import fr.inra.urgi.faidare.domain.jsonld.data.IncludedInDataCatalog; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialDatasetAuthorshipVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialDatasetAuthorshipVO.java similarity index 86% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialDatasetAuthorshipVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialDatasetAuthorshipVO.java index 1966c1b89fff67d8a67d7af01b0c7c681fcf80b2..a99c764c37e8105fd696aea312f1c2166411ed17 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialDatasetAuthorshipVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialDatasetAuthorshipVO.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.data; +package fr.inra.urgi.faidare.domain.data; import com.fasterxml.jackson.annotation.JsonSetter; import com.fasterxml.jackson.annotation.Nulls; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiTrialDatasetAuthorship; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiTrialDatasetAuthorship; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialStudySummaryVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialStudySummaryVO.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialStudySummaryVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialStudySummaryVO.java index 1250e326cea51922bb5fcc43594e6f1b6ae2cc3d..1bd7d5377d690d65d6e4e6fdb63974a29ed95388 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialStudySummaryVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialStudySummaryVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data; +package fr.inra.urgi.faidare.domain.data; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiTrialStudy; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiTrialStudy; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialVO.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialVO.java index b2b39d4cd72590d48231830735ba4aa441dd1ce6..71a150e390d569f3e840a47f878c24ebb8e7f32d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/TrialVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/TrialVO.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.domain.data; +package fr.inra.urgi.faidare.domain.data; import com.fasterxml.jackson.annotation.JsonSetter; import com.fasterxml.jackson.annotation.Nulls; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.brapi.v1.data.*; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURL; -import fr.inra.urgi.gpds.domain.jsonld.data.IncludedInDataCatalog; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.domain.brapi.v1.data.*; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURL; +import fr.inra.urgi.faidare.domain.jsonld.data.IncludedInDataCatalog; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; import java.util.Date; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/CollPop.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/CollPop.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/CollPop.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/CollPop.java index 463f4ce2b56aa63b4da2e22fee75c3356f226373..b9ab3e1b8f3ce3973eb74607a5d8869f9bcbfc63 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/CollPop.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/CollPop.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/CollPopVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/CollPopVO.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/CollPopVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/CollPopVO.java index 9b87927dba76fa32e7f4ab5e7c6ceeb8fc7910f3..b26131fefef747a8aaeb46ea54640c3446850068 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/CollPopVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/CollPopVO.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/DonorVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/DonorVO.java similarity index 92% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/DonorVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/DonorVO.java index 8cd5d7cd7b6f63b68ceaabba0f867f545ccab398..8bab9ec7efae8ebfa64e178d299292dfc982a7b8 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/DonorVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/DonorVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasmDonor; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasmDonor; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ExtendedDonor.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ExtendedDonor.java similarity index 67% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ExtendedDonor.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ExtendedDonor.java index a18dd7e4ab56f9f38e0d72bfeca5535e3be4bae2..fd5164d5d6c2a789170707b2a5c492d851c567f4 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ExtendedDonor.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ExtendedDonor.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasmDonor; +import fr.inra.urgi.faidare.domain.JSONView; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasmDonor; /** * Extends the BrAPI germplasm with GnpIS fields diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ExtendedGermplasm.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ExtendedGermplasm.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ExtendedGermplasm.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ExtendedGermplasm.java index 254e0c333d87a67d87be9286a7dac189411321a4..4f2c156569e5653fa89831f85fda619d2ee4f641 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ExtendedGermplasm.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ExtendedGermplasm.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasm; -import fr.inra.urgi.gpds.domain.data.GnpISInternal; +import fr.inra.urgi.faidare.domain.JSONView; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasm; +import fr.inra.urgi.faidare.domain.data.GnpISInternal; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Genealogy.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Genealogy.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Genealogy.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Genealogy.java index 34c11b708ec2e0b1446b9fb163f6eb4aa3c08e7b..e9837d90c3e0e3cda986a162fb6f8fafd738c181 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Genealogy.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Genealogy.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GenealogyVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GenealogyVO.java similarity index 98% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GenealogyVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GenealogyVO.java index 492157c70a72b5c117c4e52ac2b150bdb520d3e7..ba0435e978b54836ef2497a87f75e65813382885 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GenealogyVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GenealogyVO.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmAttributeValueListVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmAttributeValueListVO.java similarity index 75% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmAttributeValueListVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmAttributeValueListVO.java index a4d153cbe4e3daa04ef34d1120eac0324454c75e..39b810782414faae48f17e861723180ab5724eed 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmAttributeValueListVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmAttributeValueListVO.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasmAttributeValue; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasmAttributeValueList; -import fr.inra.urgi.gpds.domain.data.GnpISInternal; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Nested; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasmAttributeValue; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasmAttributeValueList; +import fr.inra.urgi.faidare.domain.data.GnpISInternal; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Nested; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmAttributeValueVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmAttributeValueVO.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmAttributeValueVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmAttributeValueVO.java index 54a35eb862ecc700e79e00a12f7a835ccd156cfa..66d125986c1c7e3598b92f968154a8fdd640aa43 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmAttributeValueVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmAttributeValueVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasmAttributeValue; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasmAttributeValue; import java.util.Date; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmInstitute.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmInstitute.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmInstitute.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmInstitute.java index a90b324ab014c33344b3c8392fb9bc984eeb9919..692f62f7b58dd83e84ec830d7523da173490dfab 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmInstitute.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmInstitute.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmInstituteVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmInstituteVO.java similarity index 97% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmInstituteVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmInstituteVO.java index e8a9d5f80b48af014355acabb2d3c82ab22c09ba..e6da09ec204d813ef869e78620a7632c3cd19865 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmInstituteVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmInstituteVO.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmVO.java similarity index 96% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmVO.java index 10c8779f8b44f5991f645cbb79da8d36d8750a8d..6e3312fb5793b5f198f8671b74ba4f814c7fac08 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/GermplasmVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/GermplasmVO.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonSetter; import com.fasterxml.jackson.annotation.Nulls; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasm; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURL; -import fr.inra.urgi.gpds.domain.jsonld.data.IncludedInDataCatalog; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasm; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURL; +import fr.inra.urgi.faidare.domain.jsonld.data.IncludedInDataCatalog; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; import java.io.Serializable; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Institute.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Institute.java similarity index 87% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Institute.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Institute.java index 0dccd21f3994556d8ef78ae2aa46bc8075144e90..918211210a890847ec8c1e5f0e6cea7e1949b5f9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Institute.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Institute.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/InstituteVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/InstituteVO.java similarity index 97% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/InstituteVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/InstituteVO.java index b1e4f8fa23605b46cae8a8cda28e3e2ee70a8628..f29691bfbfb8f9a08908a40420aa18203e0035bf 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/InstituteVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/InstituteVO.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ParentProgenyVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ParentProgenyVO.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ParentProgenyVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ParentProgenyVO.java index a2363c75b3dcdddd296fefa80a93dff49fea080c..e4a3df6560673c0ff5715c443761567af9ca42cb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ParentProgenyVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ParentProgenyVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiParentProgeny; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiParentProgeny; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PedigreeVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PedigreeVO.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PedigreeVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PedigreeVO.java index ff6da96b06a262cadd7dd550029c887ff8b713d8..6c5914d00d7e2937f8b1edd8ac1849bf852f54dd 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PedigreeVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PedigreeVO.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiPedigree; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiSibling; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiPedigree; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiSibling; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; import java.io.Serializable; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Photo.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Photo.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Photo.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Photo.java index 4f5c6327b9929c7e48da8fa9bfab7e6b1de3d8a7..928719b7f2704575a5e1944c63e26ff37b383398 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Photo.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Photo.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PhotoVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PhotoVO.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PhotoVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PhotoVO.java index 748db321ec9d8f291070677db2d8ac7ab8e56cfd..c37cf60e2fd81699493d82b283d9e1bd8220a7c4 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PhotoVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PhotoVO.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ProgenyVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ProgenyVO.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ProgenyVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ProgenyVO.java index 8357566c01d6103f48dc26e4910d152dcced0f05..88d8f908ef5031045085bfdbd0d73786727ee51b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/ProgenyVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/ProgenyVO.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiParentProgeny; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiProgeny; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiParentProgeny; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiProgeny; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; import java.io.Serializable; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PuiNameValue.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PuiNameValue.java similarity index 75% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PuiNameValue.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PuiNameValue.java index f7e747d806e365c1cb7c63ed65756e1dd95a0f4d..21611a08c3bddd1e53ff6d13a449e688b2e70ed7 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/PuiNameValue.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/PuiNameValue.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SiblingVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SiblingVO.java similarity index 85% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SiblingVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SiblingVO.java index b97825e820073bded48f9d2c1080868a3e3092b7..f26f0acdf078d8bc559758b42faafc2f1f0058c8 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SiblingVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SiblingVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiSibling; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiSibling; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SimpleVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SimpleVO.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SimpleVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SimpleVO.java index 27006991db19639526bcfd31473cf7c649f8f2a4..6e9fcd028d30f099f27487bbce0ddf3932080af6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SimpleVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SimpleVO.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Site.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Site.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Site.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Site.java index e23d19b3c962ee5c6f61decd8558e8c88beedf77..72479946d41e9a27c1ed62e2b8422edf5ad48f1b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/Site.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/Site.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SiteVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SiteVO.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SiteVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SiteVO.java index 72db155a6bc50fb4090389083ce968e049596c3b..a62f5e2435f97aee59f79c782f317ec48aad1534 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/SiteVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/SiteVO.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/TaxonSourceVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/TaxonSourceVO.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/TaxonSourceVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/TaxonSourceVO.java index 5f362461fed4b99d869bc639683156c5b5e4970c..13cb28018fbd4c7b6769430bfd437444f9aebef3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/germplasm/TaxonSourceVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/germplasm/TaxonSourceVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.germplasm; +package fr.inra.urgi.faidare.domain.data.germplasm; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasmTaxonSource; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasmTaxonSource; import java.io.Serializable; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationUnitVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationUnitVO.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationUnitVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationUnitVO.java index 88b4c7252d6ea88bd71cad2d9c3a07e702772c57..6ad0bb93e8d50c22f27f70d0b3d21715b5358dae 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationUnitVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationUnitVO.java @@ -1,18 +1,18 @@ -package fr.inra.urgi.gpds.domain.data.phenotype; +package fr.inra.urgi.faidare.domain.data.phenotype; import com.fasterxml.jackson.annotation.JsonSetter; import com.fasterxml.jackson.annotation.Nulls; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservation; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservationUnit; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservationUnitTreatment; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservationUnitXRef; -import fr.inra.urgi.gpds.domain.data.GnpISInternal; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.IncludedInDataCatalog; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Nested; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservation; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservationUnit; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservationUnitTreatment; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservationUnitXRef; +import fr.inra.urgi.faidare.domain.data.GnpISInternal; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.IncludedInDataCatalog; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Nested; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationUnitXRefVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationUnitXRefVO.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationUnitXRefVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationUnitXRefVO.java index ccb0daa0a749a757823520acbee21d1151a4cf4a..08368c0ff47febaf9e33120f21205fa6b6859399 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationUnitXRefVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationUnitXRefVO.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.data.phenotype; +package fr.inra.urgi.faidare.domain.data.phenotype; import com.fasterxml.jackson.annotation.JsonSetter; import com.fasterxml.jackson.annotation.Nulls; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservationUnitXRef; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservationUnitXRef; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationVO.java similarity index 93% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationVO.java index f3fb11b688a4300daa677c7bc0c8d60d0236ad31..c3b758862950fc7c66d16ac1f6f7e0b01daec715 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/ObservationVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/ObservationVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.phenotype; +package fr.inra.urgi.faidare.domain.data.phenotype; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservation; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservation; import java.util.Date; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/TreatmentVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/TreatmentVO.java similarity index 78% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/TreatmentVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/TreatmentVO.java index 1267a0fb57732938acce13d687ae953190ca62c2..480d33359aea35411b5835d78787c70d6d3601b6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/phenotype/TreatmentVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/phenotype/TreatmentVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.phenotype; +package fr.inra.urgi.faidare.domain.data.phenotype; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservationUnitTreatment; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservationUnitTreatment; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyDataLinkVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyDataLinkVO.java similarity index 85% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyDataLinkVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyDataLinkVO.java index fb96dc49ae2feab7a1eaf949a05e0afe01b50519..175be394962fff735e3e11b252c303188d8b89c4 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyDataLinkVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyDataLinkVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.study; +package fr.inra.urgi.faidare.domain.data.study; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiStudyDataLink; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiStudyDataLink; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyDetailVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyDetailVO.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyDetailVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyDetailVO.java index e61775edf7e28bf4b6da594d73c0f95f629b00b6..e34075b172ef63d98727970267e3af56864e8eba 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyDetailVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyDetailVO.java @@ -1,17 +1,17 @@ -package fr.inra.urgi.gpds.domain.data.study; +package fr.inra.urgi.faidare.domain.data.study; import com.fasterxml.jackson.annotation.JsonView; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.JSONView; -import fr.inra.urgi.gpds.domain.brapi.v1.data.*; -import fr.inra.urgi.gpds.domain.data.ContactVO; -import fr.inra.urgi.gpds.domain.data.GnpISInternal; -import fr.inra.urgi.gpds.domain.data.LocationVO; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURL; -import fr.inra.urgi.gpds.domain.jsonld.data.IncludedInDataCatalog; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.domain.JSONView; +import fr.inra.urgi.faidare.domain.brapi.v1.data.*; +import fr.inra.urgi.faidare.domain.data.ContactVO; +import fr.inra.urgi.faidare.domain.data.GnpISInternal; +import fr.inra.urgi.faidare.domain.data.LocationVO; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURL; +import fr.inra.urgi.faidare.domain.jsonld.data.IncludedInDataCatalog; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; import java.util.Date; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyLastUpdateVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyLastUpdateVO.java similarity index 83% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyLastUpdateVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyLastUpdateVO.java index 753e77927958ab37587b5611289d824b57485a64..9ded3ea343e831247205d2178d8df8381a71997a 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudyLastUpdateVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudyLastUpdateVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.study; +package fr.inra.urgi.faidare.domain.data.study; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiStudyLastUpdate; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiStudyLastUpdate; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudySummaryVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudySummaryVO.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudySummaryVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudySummaryVO.java index 328a695e83ea64b91a88fc458344082de39ac46c..d27d745dcd37d8fb05169e930d48d7c15b6f3010 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/study/StudySummaryVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/study/StudySummaryVO.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.domain.data.study; +package fr.inra.urgi.faidare.domain.data.study; import com.fasterxml.jackson.annotation.JsonIgnore; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiAdditionalInfo; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiStudySummary; -import fr.inra.urgi.gpds.domain.data.GnpISInternal; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURL; -import fr.inra.urgi.gpds.domain.jsonld.data.IncludedInDataCatalog; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiAdditionalInfo; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiStudySummary; +import fr.inra.urgi.faidare.domain.data.GnpISInternal; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURL; +import fr.inra.urgi.faidare.domain.jsonld.data.IncludedInDataCatalog; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; import java.util.Date; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/MethodVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/MethodVO.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/MethodVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/MethodVO.java index 1ec661aae04921d92936ca6d1c6561c843a97d5d..231b75641f6bb4c0aebe257eb60401fd4dd0bf38 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/MethodVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/MethodVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.variable; +package fr.inra.urgi.faidare.domain.data.variable; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiMethod; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiMethod; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ObservationVariableVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ObservationVariableVO.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ObservationVariableVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ObservationVariableVO.java index f620f6a45f22e859ec26b0513efd13680bfde930..e18964d7fbcc92d8755c76dd9ba2f75f875ebf88 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ObservationVariableVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ObservationVariableVO.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.domain.data.variable; +package fr.inra.urgi.faidare.domain.data.variable; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiMethod; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiObservationVariable; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiScale; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiTrait; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURL; -import fr.inra.urgi.gpds.domain.jsonld.data.IncludedInDataCatalog; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiMethod; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiObservationVariable; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiScale; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiTrait; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURL; +import fr.inra.urgi.faidare.domain.jsonld.data.IncludedInDataCatalog; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/OntologyLinkVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/OntologyLinkVO.java similarity index 80% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/OntologyLinkVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/OntologyLinkVO.java index eb24c07ddf08ba97f4e2937b2cf32a67e9fae5c4..a8e5224e29f0e8423578df00f431a0f512fbebbb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/OntologyLinkVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/OntologyLinkVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.variable; +package fr.inra.urgi.faidare.domain.data.variable; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiOntologyLink; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiOntologyLink; /** * Generic link reference inspired by HATEOS (used to list download links for the ontology) diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/OntologyVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/OntologyVO.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/OntologyVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/OntologyVO.java index 0429c4c0f1696114332d13b751b3c873d053a4c5..f17c75e042d70871d3b14d6d83defb90061945a6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/OntologyVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/OntologyVO.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.domain.data.variable; +package fr.inra.urgi.faidare.domain.data.variable; import com.fasterxml.jackson.annotation.JsonSetter; import com.fasterxml.jackson.annotation.Nulls; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiOntology; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiOntologyLink; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURI; -import fr.inra.urgi.gpds.domain.jsonld.data.HasURL; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiOntology; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiOntologyLink; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURI; +import fr.inra.urgi.faidare.domain.jsonld.data.HasURL; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ScaleVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ScaleVO.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ScaleVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ScaleVO.java index 6629e99439d9b52899ce057b00417d24acdd0375..e20a0d0b9fe2e7c54b5831ac8915b50763527a88 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ScaleVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ScaleVO.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.data.variable; +package fr.inra.urgi.faidare.domain.data.variable; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiScale; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiScaleValidValue; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiScale; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiScaleValidValue; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ScaleValidValueVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ScaleValidValueVO.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ScaleValidValueVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ScaleValidValueVO.java index c773c48a0b0cbde0bd9f7ecd154109b20d5f83ed..a2c1c8d900642fdcc48b399a2cd5f69dc56ec702 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/ScaleValidValueVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/ScaleValidValueVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.variable; +package fr.inra.urgi.faidare.domain.data.variable; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiScaleValidValue; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiScaleValidValue; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/TraitVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/TraitVO.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/TraitVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/TraitVO.java index 8c68ef21c8bc3d4657940bc38f9771664d8bfd3e..063d61f40b9ec3bbec45d22ffadf2992d930b729 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/data/variable/TraitVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/data/variable/TraitVO.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.data.variable; +package fr.inra.urgi.faidare.domain.data.variable; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiTrait; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiTrait; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/criteria/DataDiscoveryCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/criteria/DataDiscoveryCriteria.java similarity index 73% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/criteria/DataDiscoveryCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/criteria/DataDiscoveryCriteria.java index 6275029bf97dc159bbafe38ae23c94c108638944..5e4615a5e0705c162a9ee63adfa9ebef6b1ad42d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/criteria/DataDiscoveryCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/criteria/DataDiscoveryCriteria.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.criteria; +package fr.inra.urgi.faidare.domain.datadiscovery.criteria; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.SortCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.SortCriteria; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/criteria/DataDiscoveryCriteriaImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/criteria/DataDiscoveryCriteriaImpl.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/criteria/DataDiscoveryCriteriaImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/criteria/DataDiscoveryCriteriaImpl.java index 5fc5f7fce03a59430f36fa7e53c6e8f98d366044..892f95d0cdee4ba14b4ae4ac4b4f767a319a9c12 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/criteria/DataDiscoveryCriteriaImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/criteria/DataDiscoveryCriteriaImpl.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.criteria; - -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataDiscoveryDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.NoDocumentMapping; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.QueryType; +package fr.inra.urgi.faidare.domain.datadiscovery.criteria; + +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataDiscoveryDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.NoDocumentMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.QueryType; import org.elasticsearch.index.query.MatchPhraseQueryBuilder; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscovery.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscovery.java similarity index 77% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscovery.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscovery.java index f0c4bad01d479f6f700df7f5ca30c8d33bb3c83f..146a1a5c38444db265f17546531a4a564ce2d21e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscovery.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscovery.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; -import fr.inra.urgi.gpds.domain.jsonld.data.Dataset; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.domain.JSONView; +import fr.inra.urgi.faidare.domain.jsonld.data.Dataset; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryDocument.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryDocument.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryDocument.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryDocument.java index efd64d02d2616e4e0c13c417911c70dc2c925569..1901337d4433eb57020d1fdcec35e34c867eb304 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryDocument.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryDocument.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; import java.io.Serializable; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryViaGermplasm.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryViaGermplasm.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryViaGermplasm.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryViaGermplasm.java index c7b272609bf3760c6c3fda55ece091f8fd46030d..b67faa7afdbf7e625ff2120441a69ea5f4df9b62 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryViaGermplasm.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryViaGermplasm.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; import com.fasterxml.jackson.annotation.JsonIgnore; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryViaTrait.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryViaTrait.java similarity index 80% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryViaTrait.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryViaTrait.java index f69cc6482007c50a4ba0ccbbc95c329a7654db7e..fda94bdbc2c567a43fb8124122e71d3b042c2b5d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataDiscoveryViaTrait.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataDiscoveryViaTrait.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; import com.fasterxml.jackson.annotation.JsonIgnore; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataSource.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataSource.java similarity index 81% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataSource.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataSource.java index 539063ae779f07ca28564aacd68052e1e2140428..64c74c07ffd5f2cce03cad312bf9797de0d559a9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataSource.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataSource.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; -import fr.inra.urgi.gpds.domain.jsonld.data.DataCatalog; +import fr.inra.urgi.faidare.domain.JSONView; +import fr.inra.urgi.faidare.domain.jsonld.data.DataCatalog; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataSourceImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataSourceImpl.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataSourceImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataSourceImpl.java index 07d7f560d9a8d226948a89b3e85a178cf8f2430b..6ff2d40d4af25f177d9c0628c390d42e7bb8ae67 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/DataSourceImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/DataSourceImpl.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; import java.io.Serializable; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/Facet.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/Facet.java similarity index 73% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/Facet.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/Facet.java index 1fa62f2d7462b9664e98da62bc6ae2d7c2850221..90635032fd27023bc778f280e730b41d28ebbd52 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/Facet.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/Facet.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetImpl.java similarity index 92% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetImpl.java index ebb78f1b775dfe794859f64a781cae863081acbb..b07a667967e3ff410f64860f1fa8e25172edabdd 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetImpl.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetTerm.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetTerm.java similarity index 70% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetTerm.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetTerm.java index 241ef0fd1257cda883a70e164807f1af7b6f9470..84c7fa56dff66d5d54ea1233f463d28f406a0f21 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetTerm.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetTerm.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetTermImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetTermImpl.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetTermImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetTermImpl.java index 9860d3e91cb0d5d2e4de6f1a366ed95ca0c3b8bb..33c1a0169c38d41c4ae6e23824bcb674a746a118 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/data/FacetTermImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/data/FacetTermImpl.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.data; +package fr.inra.urgi.faidare.domain.datadiscovery.data; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/response/DataDiscoveryResponse.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/response/DataDiscoveryResponse.java similarity index 51% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/response/DataDiscoveryResponse.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/response/DataDiscoveryResponse.java index 6bbb3fbd5a9253dc441c9161a9c13747e59779a9..2e92bea47dd53dd934e762c5349c3b8175f5fcf0 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/datadiscovery/response/DataDiscoveryResponse.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/datadiscovery/response/DataDiscoveryResponse.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.domain.datadiscovery.response; +package fr.inra.urgi.faidare.domain.datadiscovery.response; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiData; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiMetadata; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataDiscoveryDocument; -import fr.inra.urgi.gpds.domain.datadiscovery.data.Facet; +import fr.inra.urgi.faidare.domain.JSONView; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiData; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiMetadata; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataDiscoveryDocument; +import fr.inra.urgi.faidare.domain.datadiscovery.data.Facet; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/Context.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/Context.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/Context.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/Context.java index a41a6b77cebd1b05104629958b14b928fde1aff8..03a4374e2b960c6af8483faaa69c994eb850ee6e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/Context.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/Context.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonAnyGetter; import com.fasterxml.jackson.annotation.JsonAnySetter; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.io.Serializable; import java.util.HashMap; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/DataCatalog.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/DataCatalog.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/DataCatalog.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/DataCatalog.java index edbecfc105f624b142250b6e1c1366b1c3b8a573..3adec866bedf437f6d0f72c94cd14c8a6c28f361 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/DataCatalog.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/DataCatalog.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * {@see http://schema.org/DataCatalog} as JSON-LD properties diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/Dataset.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/Dataset.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/Dataset.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/Dataset.java index 41b87813961ad5c8d0129d04fa650809b01b8a36..363b5b1ab08f26bca38d1a081f019e2f421748c9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/Dataset.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/Dataset.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * {@see http://schema.org/Dataset} as JSON-LD properties diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasContext.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasContext.java similarity index 73% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasContext.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasContext.java index 8acc0c0a8ce3d6a9373bc77dffe8137337c17874..43e04ca2844868bacf8828686dc893ad7d34072e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasContext.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasContext.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasGraph.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasGraph.java similarity index 76% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasGraph.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasGraph.java index dab2f1162fca9fa6fddfc11eb7d233bf28edcaee..2c0583b2a14b91a410fe6a318a879990197e20ef 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasGraph.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasGraph.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasType.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasType.java similarity index 77% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasType.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasType.java index 01529ea6fd34975826589c36b35752853cd0e031..c8f29b7c242215e3d891e2bcc24f443a7c850803 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasType.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasType.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasURI.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasURI.java similarity index 74% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasURI.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasURI.java index 0d4baa04d4c85af75567821afa49bc825ddeaef5..80dcbe97920e248f75d2af31d14e7ca4abe9caf7 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasURI.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasURI.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasURL.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasURL.java similarity index 75% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasURL.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasURL.java index eebeec86fc64d92654e8e974f85489598510a890..964372b09e03aabd4eaa5af475f4c0e46ce1682b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/HasURL.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/HasURL.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/IncludedInDataCatalog.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/IncludedInDataCatalog.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/IncludedInDataCatalog.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/IncludedInDataCatalog.java index 296f21984f44ef1a294be559e41ae9ff303e8a5a..b26fc198d6e832205f15e1409f8da8a4576295e6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/IncludedInDataCatalog.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/IncludedInDataCatalog.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonView; -import fr.inra.urgi.gpds.domain.JSONView; +import fr.inra.urgi.faidare.domain.JSONView; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/JSONLD.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/JSONLD.java similarity index 69% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/JSONLD.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/JSONLD.java index ec83bc456bceaa6f888fe77aee79f18aff7adf0f..7aeca7dbf20277f0b5ea1dfbe7bb6176127b14fd 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/JSONLD.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/JSONLD.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; /** * Base JSON-LD properties diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/package-info.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/package-info.java similarity index 71% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/package-info.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/package-info.java index 5592eabbbb63d6bf63ffe21e207b64374ba6b381..21ab6d9be67c4f7e3fde6ee512f5c023a7acdab5 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/jsonld/data/package-info.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/jsonld/data/package-info.java @@ -3,4 +3,4 @@ * * @author gcornut */ -package fr.inra.urgi.gpds.domain.jsonld.data; +package fr.inra.urgi.faidare.domain.jsonld.data; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiListResponseImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiListResponseImpl.java similarity index 75% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiListResponseImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiListResponseImpl.java index c96fb872c5a0d90b8ef11d051a9ab9b108a2c5b9..c215a839000bb9b0410a70eb1f6ff892e8002546 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiListResponseImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiListResponseImpl.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiData; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiMetadata; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiData; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiMetadata; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiMetadataImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiMetadataImpl.java similarity index 85% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiMetadataImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiMetadataImpl.java index 696be2409d72fd5b5668ae98d3e5db4225b0fc70..185c0de0f312c7374a9ef3ea31ba40f9d766e3cb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiMetadataImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiMetadataImpl.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiMetadata; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiPagination; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiStatus; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiMetadata; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiPagination; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiStatus; import java.util.ArrayList; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiResponseFactory.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiResponseFactory.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiResponseFactory.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiResponseFactory.java index 1be9cb48630ccb077c31db20b49ed7988c0cc41e..a8a26095354ee309efb985b821163eef82890eff 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiResponseFactory.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiResponseFactory.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.api.brapi.v1.exception.BrapiPaginationException; -import fr.inra.urgi.gpds.domain.brapi.v1.response.*; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataDiscoveryDocument; -import fr.inra.urgi.gpds.domain.datadiscovery.data.FacetImpl; -import fr.inra.urgi.gpds.domain.datadiscovery.response.DataDiscoveryResponse; +import fr.inra.urgi.faidare.api.brapi.v1.exception.BrapiPaginationException; +import fr.inra.urgi.faidare.domain.brapi.v1.response.*; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataDiscoveryDocument; +import fr.inra.urgi.faidare.domain.datadiscovery.data.FacetImpl; +import fr.inra.urgi.faidare.domain.datadiscovery.response.DataDiscoveryResponse; import org.springframework.http.HttpStatus; import java.util.ArrayList; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiResponseImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiResponseImpl.java similarity index 76% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiResponseImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiResponseImpl.java index dc62b4f6262d3268b073b55c6618a626579980a2..5be75cfccd9ee30c8afd9c4d8743ef2f58913e52 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiResponseImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiResponseImpl.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiMetadata; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiResponse; -import fr.inra.urgi.gpds.domain.jsonld.data.Context; -import fr.inra.urgi.gpds.domain.jsonld.data.HasContext; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiMetadata; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiResponse; +import fr.inra.urgi.faidare.domain.jsonld.data.Context; +import fr.inra.urgi.faidare.domain.jsonld.data.HasContext; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiStatusImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiStatusImpl.java similarity index 78% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiStatusImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiStatusImpl.java index 72166fd552f1077e999eb02efa1fbc2b0dc11e8e..d23fa1a2b3c5401c40e2c043815551519db4cceb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/ApiStatusImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/ApiStatusImpl.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiStatus; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiStatus; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/DataDiscoveryResponseImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/DataDiscoveryResponseImpl.java similarity index 56% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/DataDiscoveryResponseImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/DataDiscoveryResponseImpl.java index 254c483747a6b6c04be696ad2088e8ed6a6dedd5..695ad6dc6c5a2609c8b2249327997efac9b7c562 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/DataDiscoveryResponseImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/DataDiscoveryResponseImpl.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiMetadata; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataDiscoveryDocument; -import fr.inra.urgi.gpds.domain.datadiscovery.data.Facet; -import fr.inra.urgi.gpds.domain.datadiscovery.data.FacetImpl; -import fr.inra.urgi.gpds.domain.datadiscovery.response.DataDiscoveryResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiMetadata; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataDiscoveryDocument; +import fr.inra.urgi.faidare.domain.datadiscovery.data.Facet; +import fr.inra.urgi.faidare.domain.datadiscovery.data.FacetImpl; +import fr.inra.urgi.faidare.domain.datadiscovery.response.DataDiscoveryResponse; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/PaginatedList.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/PaginatedList.java similarity index 96% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/PaginatedList.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/PaginatedList.java index df558bae397655037518eb4aa65a552e3378b212..c05f459c8da0ec72927713a4ba0e3ee374cc52b8 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/PaginatedList.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/PaginatedList.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; import java.util.*; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/Pagination.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/Pagination.java similarity index 68% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/Pagination.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/Pagination.java index 1ad3d3e35da1edc2da0225c5762eefc13bfbc5d1..8c52676948bf0f573bb8940599cfd3f1e37a691a 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/Pagination.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/Pagination.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiPagination; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiPagination; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/PaginationImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/PaginationImpl.java similarity index 92% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/response/PaginationImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/response/PaginationImpl.java index afa67be80cd43cca13829c6d256fffd996dd6106..01dc1e7b31ca7e95f368688aed78c2ea43aac818 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/response/PaginationImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/response/PaginationImpl.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; /** * @author gcornut diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/xref/DocumentFields.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/xref/DocumentFields.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/xref/DocumentFields.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/xref/DocumentFields.java index 40d4498fadd947730b03a083e2da5b0063ab360b..af7420a01082796fdd1d467fdec2cca8d3efdccf 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/xref/DocumentFields.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/xref/DocumentFields.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.xref; +package fr.inra.urgi.faidare.domain.xref; /** * Imported and adapted from unified-interface legacy diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/xref/DocumentFieldsException.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/xref/DocumentFieldsException.java similarity index 87% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/xref/DocumentFieldsException.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/xref/DocumentFieldsException.java index e000652074bbb50c0ee708e2880f33fabf26d812..715f76e1c5441f226ed3908b11be09293e25da9f 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/xref/DocumentFieldsException.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/xref/DocumentFieldsException.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.xref; +package fr.inra.urgi.faidare.domain.xref; /** diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/xref/XRefDocumentSearchCriteria.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/xref/XRefDocumentSearchCriteria.java similarity index 72% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/xref/XRefDocumentSearchCriteria.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/xref/XRefDocumentSearchCriteria.java index 7855ef9679266cf9bb8c23e6d5e2e181d59d07d1..7ca7b26afe0f212fa6c997315c92214409f74b88 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/xref/XRefDocumentSearchCriteria.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/xref/XRefDocumentSearchCriteria.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.domain.xref; +package fr.inra.urgi.faidare.domain.xref; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteriaImpl; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteriaImpl; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/xref/XRefDocumentVO.java b/backend/src/main/java/fr/inra/urgi/faidare/domain/xref/XRefDocumentVO.java similarity index 98% rename from backend/src/main/java/fr/inra/urgi/gpds/domain/xref/XRefDocumentVO.java rename to backend/src/main/java/fr/inra/urgi/faidare/domain/xref/XRefDocumentVO.java index 9ac92362ebab7ee76aadb52f754aa6fc408fcf3b..b6ae340faf0b51cffd5914df39958e687bd09ca5 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/xref/XRefDocumentVO.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/domain/xref/XRefDocumentVO.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.domain.xref; +package fr.inra.urgi.faidare.domain.xref; import com.fasterxml.jackson.annotation.JsonProperty; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESRequestFactory.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESRequestFactory.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESRequestFactory.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESRequestFactory.java index 3dd6169074359886fa6b289fed9d68f81e333d71..5017cacaafd65d5ec812471bc549eae251cfb1cd 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESRequestFactory.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESRequestFactory.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.elasticsearch; +package fr.inra.urgi.faidare.elasticsearch; import com.google.common.base.Joiner; -import fr.inra.urgi.gpds.config.GPDSProperties; -import fr.inra.urgi.gpds.repository.http.UserGroupsResourceClient; +import fr.inra.urgi.faidare.config.FaidareProperties; +import fr.inra.urgi.faidare.repository.http.UserGroupsResourceClient; import org.elasticsearch.action.search.SearchRequest; import org.elasticsearch.action.search.SearchRequestBuilder; import org.elasticsearch.action.search.SearchScrollRequest; @@ -24,13 +24,13 @@ public class ESRequestFactory { public static final int MAX_TERM_AGG_SIZE = Integer.MAX_VALUE; private UserGroupsResourceClient userGroupsResourceClient; - private GPDSProperties properties; + private FaidareProperties properties; private final IndicesOptions indicesOptions; public ESRequestFactory( UserGroupsResourceClient userGroupsResourceClient, - GPDSProperties properties + FaidareProperties properties ) { this.userGroupsResourceClient = userGroupsResourceClient; this.properties = properties; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESResponseParser.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESResponseParser.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESResponseParser.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESResponseParser.java index 65741bcea6c95e6aa038637400910d774684a9c0..092892399f62f7820670f3c057665c55d11c7857 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESResponseParser.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESResponseParser.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.elasticsearch; +package fr.inra.urgi.faidare.elasticsearch; import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectReader; import com.google.common.base.Joiner; -import fr.inra.urgi.gpds.domain.JSONView; -import fr.inra.urgi.gpds.domain.datadiscovery.data.FacetTermImpl; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.domain.JSONView; +import fr.inra.urgi.faidare.domain.datadiscovery.data.FacetTermImpl; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.search.SearchHit; import org.elasticsearch.search.SearchHits; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESScrollIterator.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESScrollIterator.java similarity index 95% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESScrollIterator.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESScrollIterator.java index 8e2c69126dfbc02268e4f2e8d732e09b2a03ef7a..f106e9b7709dfc4d8e407322732e72ddd576835a 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/ESScrollIterator.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/ESScrollIterator.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.elasticsearch; +package fr.inra.urgi.faidare.elasticsearch; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; import org.elasticsearch.action.search.SearchRequest; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.action.search.SearchScrollRequest; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/AnnotatedCriteriaMapper.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/AnnotatedCriteriaMapper.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/AnnotatedCriteriaMapper.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/AnnotatedCriteriaMapper.java index 7b6e0ba9f786e26809d881d4ac49697d896430b3..8a3b2484cc037a4bfeabe3edfd058eb10ea19de6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/AnnotatedCriteriaMapper.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/AnnotatedCriteriaMapper.java @@ -1,17 +1,17 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria; +package fr.inra.urgi.faidare.elasticsearch.criteria; import com.google.common.collect.ImmutableList; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.NoDocumentMapping; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMapping; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTree; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.impl.CriteriaMappingCriterionImpl; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.impl.CriteriaMappingImpl; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.impl.CriteriaMappingTreeNodeImpl; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.NoDocumentMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTree; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.impl.CriteriaMappingCriterionImpl; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.impl.CriteriaMappingImpl; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.impl.CriteriaMappingTreeNodeImpl; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; import org.springframework.beans.BeanUtils; import java.beans.PropertyDescriptor; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/CriteriaForDocument.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/CriteriaForDocument.java similarity index 83% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/CriteriaForDocument.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/CriteriaForDocument.java index 159ec8e0c95acd1d16c18d96ea601634837ca36c..a831dcbafedb91b692938d91c87ffc2a6ce08b87 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/CriteriaForDocument.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/CriteriaForDocument.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.annotation; +package fr.inra.urgi.faidare.elasticsearch.criteria.annotation; import java.lang.annotation.ElementType; import java.lang.annotation.Retention; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/DocumentPath.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/DocumentPath.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/DocumentPath.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/DocumentPath.java index c72823232ad4950515a1738831eca5c5462c60fe..3f006d964dc59d00bd1b4dad04e27fb7a85c462b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/DocumentPath.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/DocumentPath.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.annotation; +package fr.inra.urgi.faidare.elasticsearch.criteria.annotation; import java.lang.annotation.ElementType; import java.lang.annotation.Retention; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/NoDocumentMapping.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/NoDocumentMapping.java similarity index 85% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/NoDocumentMapping.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/NoDocumentMapping.java index a5846ccb6251593401a4c274403b8b7d63e8b1a7..0e6c55b4cecfe085f93f19a086ea3f0f39587e85 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/NoDocumentMapping.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/NoDocumentMapping.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.annotation; +package fr.inra.urgi.faidare.elasticsearch.criteria.annotation; import java.lang.annotation.ElementType; import java.lang.annotation.Retention; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/QueryType.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/QueryType.java similarity index 89% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/QueryType.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/QueryType.java index 901f33882c2f20a672f6f11596b17d6ed5a2b237..282dabb2033412d14684fbb7938502df02cbc207 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/annotation/QueryType.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/annotation/QueryType.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.annotation; +package fr.inra.urgi.faidare.elasticsearch.criteria.annotation; import org.elasticsearch.index.query.QueryBuilder; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMapping.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMapping.java similarity index 88% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMapping.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMapping.java index 73d00d233a8731ae88eb1a7cc473e17bb5ad81b7..0ba7fb5aa8511f50bde74f253738c8ba12f9cd61 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMapping.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMapping.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.mapping; +package fr.inra.urgi.faidare.elasticsearch.criteria.mapping; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; import java.util.List; import java.util.Map; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingCriterion.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingCriterion.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingCriterion.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingCriterion.java index 8ffc8076d9da89dd283a248625298b139b3fdb35..c56c146b83c653cb334f6bac75989c5e330d205f 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingCriterion.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingCriterion.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.mapping; +package fr.inra.urgi.faidare.elasticsearch.criteria.mapping; import org.elasticsearch.index.query.QueryBuilder; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingTree.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingTree.java similarity index 87% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingTree.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingTree.java index 87c4e050685effac57ef861cbf29be171ded182e..f6324bbcbad6b60a92aed3353d12cce327d5d181 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingTree.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingTree.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.mapping; +package fr.inra.urgi.faidare.elasticsearch.criteria.mapping; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingTreeNode.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingTreeNode.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingTreeNode.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingTreeNode.java index ff143ec7606f63081de1b8fb4010287b55f72f2d..05ad78364181ae5757b8ff4184095d9982e465f6 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/CriteriaMappingTreeNode.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/CriteriaMappingTreeNode.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.mapping; +package fr.inra.urgi.faidare.elasticsearch.criteria.mapping; import java.util.List; import java.util.Map; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingCriterionImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingCriterionImpl.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingCriterionImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingCriterionImpl.java index de2424fb9f31a6b6dc04e85ae30d0329b271ecfd..38ab2b603ca4f12a85cee97f9f17daa0db060488 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingCriterionImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingCriterionImpl.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.mapping.impl; +package fr.inra.urgi.faidare.elasticsearch.criteria.mapping.impl; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.QueryType; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingCriterion; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.QueryType; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingCriterion; import org.elasticsearch.index.query.QueryBuilder; import org.elasticsearch.index.query.TermQueryBuilder; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingImpl.java similarity index 90% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingImpl.java index d821051a691c83b88ffcaa49e30b4321d02e565c..5e97eefa10a7f66976913e90c6e8c80f5dc0460c 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingImpl.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.mapping.impl; +package fr.inra.urgi.faidare.elasticsearch.criteria.mapping.impl; import com.google.common.base.Joiner; import com.google.common.collect.ImmutableList; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMapping; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingCriterion; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTree; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingCriterion; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTree; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; import java.util.*; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingTreeNodeImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingTreeNodeImpl.java similarity index 86% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingTreeNodeImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingTreeNodeImpl.java index ce60f33bcbab47f8affbed721ff4da78f3fb80a9..05d99d7511460473e14cc8ebc8f55f03fbe343cc 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/criteria/mapping/impl/CriteriaMappingTreeNodeImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/criteria/mapping/impl/CriteriaMappingTreeNodeImpl.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.mapping.impl; +package fr.inra.urgi.faidare.elasticsearch.criteria.mapping.impl; import com.google.common.base.Joiner; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTree; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTree; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; import java.util.HashMap; import java.util.List; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentAnnotationUtil.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentAnnotationUtil.java similarity index 97% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentAnnotationUtil.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentAnnotationUtil.java index 2187864307fce3c05a81de91093d3a0d174bf3f4..a521970d7baafc394c027314ae554af65fac1af2 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentAnnotationUtil.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentAnnotationUtil.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.elasticsearch.document; +package fr.inra.urgi.faidare.elasticsearch.document; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; import com.google.common.collect.ImmutableList; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Nested; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Nested; import org.springframework.beans.BeanUtils; import java.beans.PropertyDescriptor; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentMetadata.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentMetadata.java similarity index 98% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentMetadata.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentMetadata.java index d6210d30bc4a954f831e1cb0d72a2165a4a17dce..6bf7389bd43b46f6dc5cd72ef5883b932788f0a5 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentMetadata.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentMetadata.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.document; +package fr.inra.urgi.faidare.elasticsearch.document; import com.google.common.collect.ImmutableList; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Document.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Document.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Document.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Document.java index 31db10c34e902f3faadabeb3d66201765b60cdbd..df4af121fa9a0f84b8b90b6ec188f6f36b17bf23 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Document.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Document.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.document.annotation; +package fr.inra.urgi.faidare.elasticsearch.document.annotation; import java.lang.annotation.ElementType; import java.lang.annotation.Retention; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Id.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Id.java similarity index 85% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Id.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Id.java index 372717ac913073c1e1585257c34a44cb3268c73c..61586c06b49d2797f1fc8301447d2a6f4d7081e0 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Id.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Id.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.document.annotation; +package fr.inra.urgi.faidare.elasticsearch.document.annotation; import java.lang.annotation.ElementType; import java.lang.annotation.Retention; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Nested.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Nested.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Nested.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Nested.java index 07d89c816948ad3e596144cfd7fcdf3c5f98fb9e..b0013750c9cd65251b84ce967bc9765d49f38a19 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/document/annotation/Nested.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/document/annotation/Nested.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.document.annotation; +package fr.inra.urgi.faidare.elasticsearch.document.annotation; import java.lang.annotation.ElementType; import java.lang.annotation.Retention; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/package-info.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/package-info.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/package-info.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/package-info.java index b7f100bd652bf4d6098e4748632156421889dd52..5d1d1e807d6648d656bdad382492dba3197efadb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/package-info.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/package-info.java @@ -14,4 +14,4 @@ * * @author gcornut */ -package fr.inra.urgi.gpds.elasticsearch; +package fr.inra.urgi.faidare.elasticsearch; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/query/ESQueryFactory.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/query/ESQueryFactory.java similarity index 81% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/query/ESQueryFactory.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/query/ESQueryFactory.java index 963fc94223cbb657fe4cbaf15c252c19e7336471..3b20638a3163b763b5c177970ccb2de290b8663b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/query/ESQueryFactory.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/query/ESQueryFactory.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.query; +package fr.inra.urgi.faidare.elasticsearch.query; import org.elasticsearch.index.query.QueryBuilder; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/query/impl/ESGenericQueryFactory.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/query/impl/ESGenericQueryFactory.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/query/impl/ESGenericQueryFactory.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/query/impl/ESGenericQueryFactory.java index 6d8b4a9ae6d103be7998d07ba918a633d03e3d3e..e6cbe313796803e7230f3167fbf5e73bd8db0225 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/query/impl/ESGenericQueryFactory.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/query/impl/ESGenericQueryFactory.java @@ -1,15 +1,15 @@ -package fr.inra.urgi.gpds.elasticsearch.query.impl; +package fr.inra.urgi.faidare.elasticsearch.query.impl; import com.google.common.base.Joiner; import com.google.common.collect.ImmutableSet; -import fr.inra.urgi.gpds.elasticsearch.criteria.AnnotatedCriteriaMapper; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMapping; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingCriterion; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTree; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; -import fr.inra.urgi.gpds.elasticsearch.query.ESQueryFactory; +import fr.inra.urgi.faidare.elasticsearch.criteria.AnnotatedCriteriaMapper; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingCriterion; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTree; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.query.ESQueryFactory; import org.apache.commons.lang3.NotImplementedException; import org.apache.lucene.search.join.ScoreMode; import org.elasticsearch.index.query.*; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESFindRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESFindRepository.java similarity index 63% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESFindRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESFindRepository.java index d7d6af0a40cf8f313075d933017cf6b21e7197e2..cf6ee6749314a1e98019d05824aae0b3d9026f05 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESFindRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESFindRepository.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.elasticsearch.repository; +package fr.inra.urgi.faidare.elasticsearch.repository; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; -import fr.inra.urgi.gpds.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.domain.response.PaginatedList; /** * Interface representing an ElasticSearch repository providing a paginated diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESGetByIdRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESGetByIdRepository.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESGetByIdRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESGetByIdRepository.java index 98d7da110fd4b59daae9992a190b4136dd6625ba..9b9a223edf254778ce691e776780dcf3511d7c72 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESGetByIdRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESGetByIdRepository.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.elasticsearch.repository; +package fr.inra.urgi.faidare.elasticsearch.repository; /** * Interface representing an ElasticSearch repository providing a get document diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESSuggestRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESSuggestRepository.java similarity index 75% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESSuggestRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESSuggestRepository.java index 793277f6e466b39f0ca94694d383067e08d11510..fae7bb53a5226bfac8fafd9905852355a54a8707 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/ESSuggestRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/ESSuggestRepository.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.elasticsearch.repository; +package fr.inra.urgi.faidare.elasticsearch.repository; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; import java.util.LinkedHashSet; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/BaseESRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/BaseESRepository.java similarity index 69% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/BaseESRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/BaseESRepository.java index f132d959299ba2ba8b5e13e1b006c142af38d29d..bce6728b9b4d902c29bb0fed2f5740fab06a2ff9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/BaseESRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/BaseESRepository.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.elasticsearch.repository.impl; +package fr.inra.urgi.faidare.elasticsearch.repository.impl; -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.ESGetByIdRepository; +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.ESGetByIdRepository; import org.elasticsearch.client.RestHighLevelClient; /** diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericFindRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericFindRepository.java similarity index 83% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericFindRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericFindRepository.java index 67b2aae98d3d2a5c48c748fed87474ed80e3edd7..54e7b287e44db289e5a83771353fc4bca487741e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericFindRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericFindRepository.java @@ -1,17 +1,17 @@ -package fr.inra.urgi.gpds.elasticsearch.repository.impl; - -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; -import fr.inra.urgi.gpds.domain.criteria.base.SortCriteria; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.response.Pagination; -import fr.inra.urgi.gpds.domain.response.PaginationImpl; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; -import fr.inra.urgi.gpds.elasticsearch.query.ESQueryFactory; -import fr.inra.urgi.gpds.elasticsearch.query.impl.ESGenericQueryFactory; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; +package fr.inra.urgi.faidare.elasticsearch.repository.impl; + +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.domain.criteria.base.SortCriteria; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.response.Pagination; +import fr.inra.urgi.faidare.domain.response.PaginationImpl; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.query.ESQueryFactory; +import fr.inra.urgi.faidare.elasticsearch.query.impl.ESGenericQueryFactory; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; import org.elasticsearch.action.search.SearchRequest; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.client.RequestOptions; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericGetByIdRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericGetByIdRepository.java similarity index 86% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericGetByIdRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericGetByIdRepository.java index b2b08b9ed38c235d1924b54b66a637572d73944b..967fc51ff3403acf6eb6e19b895629be3b1ea021 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericGetByIdRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericGetByIdRepository.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.elasticsearch.repository.impl; +package fr.inra.urgi.faidare.elasticsearch.repository.impl; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; -import fr.inra.urgi.gpds.elasticsearch.repository.ESGetByIdRepository; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.repository.ESGetByIdRepository; import org.elasticsearch.action.search.SearchRequest; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.client.RequestOptions; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericSuggestRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericSuggestRepository.java similarity index 87% rename from backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericSuggestRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericSuggestRepository.java index 46b3278a9a36ec4f134b96bad71e44a1cf396438..b529a3908c70e630642f34fbee514ead6b9ae467 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/elasticsearch/repository/impl/ESGenericSuggestRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/elasticsearch/repository/impl/ESGenericSuggestRepository.java @@ -1,16 +1,16 @@ -package fr.inra.urgi.gpds.elasticsearch.repository.impl; - -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.criteria.AnnotatedCriteriaMapper; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMapping; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingCriterion; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; -import fr.inra.urgi.gpds.elasticsearch.query.ESQueryFactory; -import fr.inra.urgi.gpds.elasticsearch.query.impl.ESGenericQueryFactory; -import fr.inra.urgi.gpds.elasticsearch.repository.ESSuggestRepository; +package fr.inra.urgi.faidare.elasticsearch.repository.impl; + +import fr.inra.urgi.faidare.domain.criteria.base.PaginationCriteria; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.criteria.AnnotatedCriteriaMapper; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingCriterion; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.query.ESQueryFactory; +import fr.inra.urgi.faidare.elasticsearch.query.impl.ESGenericQueryFactory; +import fr.inra.urgi.faidare.elasticsearch.repository.ESSuggestRepository; import org.apache.commons.lang3.StringUtils; import org.apache.lucene.analysis.miscellaneous.ASCIIFoldingFilter; import org.elasticsearch.action.search.SearchRequest; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/filter/AngularRouteFilter.java b/backend/src/main/java/fr/inra/urgi/faidare/filter/AngularRouteFilter.java similarity index 98% rename from backend/src/main/java/fr/inra/urgi/gpds/filter/AngularRouteFilter.java rename to backend/src/main/java/fr/inra/urgi/faidare/filter/AngularRouteFilter.java index d307c542daba243ab2a806dbe16676d79ed0e17a..28f3a61083f2126b484c0247f3d27e69437b7ae9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/filter/AngularRouteFilter.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/filter/AngularRouteFilter.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.filter; +package fr.inra.urgi.faidare.filter; import com.google.common.base.Charsets; import com.google.common.io.ByteSource; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/filter/AuthenticationFilter.java b/backend/src/main/java/fr/inra/urgi/faidare/filter/AuthenticationFilter.java similarity index 98% rename from backend/src/main/java/fr/inra/urgi/gpds/filter/AuthenticationFilter.java rename to backend/src/main/java/fr/inra/urgi/faidare/filter/AuthenticationFilter.java index 9a6c62cbe143526ad77d75f3491a5e706b461c3d..30b384e7753a3d493ac480009e500ac7a34b3deb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/filter/AuthenticationFilter.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/filter/AuthenticationFilter.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.filter; +package fr.inra.urgi.faidare.filter; import com.google.common.base.Charsets; import com.google.common.io.BaseEncoding; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/filter/AuthenticationStore.java b/backend/src/main/java/fr/inra/urgi/faidare/filter/AuthenticationStore.java similarity index 80% rename from backend/src/main/java/fr/inra/urgi/gpds/filter/AuthenticationStore.java rename to backend/src/main/java/fr/inra/urgi/faidare/filter/AuthenticationStore.java index 4feecd775074503b77ea6e1c18464e3ceb51efa4..d2a08b081bf1814f761ff2f87ff6ff2da35bf7f3 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/filter/AuthenticationStore.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/filter/AuthenticationStore.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.filter; +package fr.inra.urgi.faidare.filter; -import fr.inra.urgi.gpds.repository.http.UserGroupsResourceClient; +import fr.inra.urgi.faidare.repository.http.UserGroupsResourceClient; /** * Store user authentication (later use in {@link UserGroupsResourceClient}) diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepository.java similarity index 71% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepository.java index de0f6ed015edf810874463d29167e401259dbcc2..6dd3738e219afa9cb7b5eabe2aca3a908ccf7efd 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepository.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.domain.datadiscovery.criteria.DataDiscoveryCriteria; -import fr.inra.urgi.gpds.domain.datadiscovery.response.DataDiscoveryResponse; -import fr.inra.urgi.gpds.elasticsearch.repository.ESSuggestRepository; +import fr.inra.urgi.faidare.domain.datadiscovery.criteria.DataDiscoveryCriteria; +import fr.inra.urgi.faidare.domain.datadiscovery.response.DataDiscoveryResponse; +import fr.inra.urgi.faidare.elasticsearch.repository.ESSuggestRepository; import java.util.LinkedHashSet; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepositoryImpl.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepositoryImpl.java index e171ee28d4e5018f7818e7533186770cd7f9954a..87deea25d64f4319b61cb6553abbcc6c0725f0e1 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepositoryImpl.java @@ -1,25 +1,25 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.api.gnpis.v1.DataDiscoveryController; -import fr.inra.urgi.gpds.domain.datadiscovery.criteria.DataDiscoveryCriteria; -import fr.inra.urgi.gpds.domain.datadiscovery.criteria.DataDiscoveryCriteriaImpl; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataDiscoveryDocument; -import fr.inra.urgi.gpds.domain.datadiscovery.data.FacetImpl; -import fr.inra.urgi.gpds.domain.datadiscovery.data.FacetTermImpl; -import fr.inra.urgi.gpds.domain.datadiscovery.response.DataDiscoveryResponse; -import fr.inra.urgi.gpds.domain.response.ApiResponseFactory; -import fr.inra.urgi.gpds.domain.response.Pagination; -import fr.inra.urgi.gpds.domain.response.PaginationImpl; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.criteria.AnnotatedCriteriaMapper; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMapping; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; -import fr.inra.urgi.gpds.elasticsearch.query.impl.ESGenericQueryFactory; -import fr.inra.urgi.gpds.elasticsearch.repository.ESSuggestRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.ESGenericFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.ESGenericSuggestRepository; +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.api.gnpis.v1.DataDiscoveryController; +import fr.inra.urgi.faidare.domain.datadiscovery.criteria.DataDiscoveryCriteria; +import fr.inra.urgi.faidare.domain.datadiscovery.criteria.DataDiscoveryCriteriaImpl; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataDiscoveryDocument; +import fr.inra.urgi.faidare.domain.datadiscovery.data.FacetImpl; +import fr.inra.urgi.faidare.domain.datadiscovery.data.FacetTermImpl; +import fr.inra.urgi.faidare.domain.datadiscovery.response.DataDiscoveryResponse; +import fr.inra.urgi.faidare.domain.response.ApiResponseFactory; +import fr.inra.urgi.faidare.domain.response.Pagination; +import fr.inra.urgi.faidare.domain.response.PaginationImpl; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.criteria.AnnotatedCriteriaMapper; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMapping; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.query.impl.ESGenericQueryFactory; +import fr.inra.urgi.faidare.elasticsearch.repository.ESSuggestRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.ESGenericFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.ESGenericSuggestRepository; import org.elasticsearch.action.search.SearchRequest; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.client.RequestOptions; diff --git a/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepository.java new file mode 100644 index 0000000000000000000000000000000000000000..9674bb34d6dd7df5ace8e5bcffaca22a8e02e495 --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepository.java @@ -0,0 +1,19 @@ +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.domain.criteria.GermplasmAttributeCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmAttributeValueListVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; + +/** + * Breeding API germplasm attribute + * + * @author gcornut + */ +public interface GermplasmAttributeRepository + extends ESFindRepository<GermplasmAttributeCriteria, GermplasmAttributeValueListVO> { + + @Override + PaginatedList<GermplasmAttributeValueListVO> find(GermplasmAttributeCriteria criteria); + +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepositoryImpl.java similarity index 64% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepositoryImpl.java index af034811ba9f984fb200e8eb286ff71f048a4039..2fee54cd23b397abe7caae2e4d3377d5eef481bb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepositoryImpl.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.domain.criteria.GermplasmAttributeCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmAttributeValueListVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.ESGenericFindRepository; +import fr.inra.urgi.faidare.domain.criteria.GermplasmAttributeCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmAttributeValueListVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.ESGenericFindRepository; import org.elasticsearch.client.RestHighLevelClient; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Repository; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmRepository.java similarity index 63% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmRepository.java index c1bf7b19ccf2ceef33fa3ab1df27d06672901057..d7652aab7bb15121499e67025a5d9b42d6f12906 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmRepository.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.domain.criteria.GermplasmSearchCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.data.germplasm.PedigreeVO; -import fr.inra.urgi.gpds.domain.data.germplasm.ProgenyVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.domain.criteria.GermplasmSearchCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.data.germplasm.PedigreeVO; +import fr.inra.urgi.faidare.domain.data.germplasm.ProgenyVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; import java.util.Iterator; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmRepositoryImpl.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmRepositoryImpl.java index 84108f48d1a4159f84bee3099453de921c5e693e..e89383e1706d94b7326085dc36e8aef075db6a62 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/GermplasmRepositoryImpl.java @@ -1,19 +1,19 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; import com.fasterxml.jackson.databind.ObjectMapper; -import fr.inra.urgi.gpds.domain.criteria.GermplasmSearchCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.data.germplasm.PedigreeVO; -import fr.inra.urgi.gpds.domain.data.germplasm.ProgenyVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.ESScrollIterator; -import fr.inra.urgi.gpds.elasticsearch.query.impl.ESGenericQueryFactory; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.ESGetByIdRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.ESGenericFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.ESGenericGetByIdRepository; +import fr.inra.urgi.faidare.domain.criteria.GermplasmSearchCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.data.germplasm.PedigreeVO; +import fr.inra.urgi.faidare.domain.data.germplasm.ProgenyVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.ESScrollIterator; +import fr.inra.urgi.faidare.elasticsearch.query.impl.ESGenericQueryFactory; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.ESGetByIdRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.ESGenericFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.ESGenericGetByIdRepository; import org.elasticsearch.action.search.SearchRequest; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.client.RequestOptions; diff --git a/backend/src/main/java/fr/inra/urgi/faidare/repository/es/LocationRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/LocationRepository.java new file mode 100644 index 0000000000000000000000000000000000000000..707f51bcd649768f66fdcbf99b8fee51736b5395 --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/LocationRepository.java @@ -0,0 +1,24 @@ +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.domain.criteria.LocationCriteria; +import fr.inra.urgi.faidare.domain.data.LocationVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.ESGetByIdRepository; + +/** + * Breeding API location + * + * @author gcornut + */ +public interface LocationRepository + extends ESFindRepository<LocationCriteria, LocationVO>, + ESGetByIdRepository<LocationVO> { + + @Override + LocationVO getById(String id); + + @Override + PaginatedList<LocationVO> find(LocationCriteria criteria); + +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/LocationRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/LocationRepositoryImpl.java similarity index 62% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/LocationRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/LocationRepositoryImpl.java index 5a66edee0ffd1feff59ad8de7dba6301b94f4c1c..af74a55c2e7f9cf7e788e3905186a2bef9a66182 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/LocationRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/LocationRepositoryImpl.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.domain.criteria.LocationCriteria; -import fr.inra.urgi.gpds.domain.data.LocationVO; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.BaseESRepository; +import fr.inra.urgi.faidare.domain.criteria.LocationCriteria; +import fr.inra.urgi.faidare.domain.data.LocationVO; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.BaseESRepository; import org.elasticsearch.client.RestHighLevelClient; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Repository; diff --git a/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepository.java new file mode 100644 index 0000000000000000000000000000000000000000..4595edfcc70542f547ef6310f164d13f5dd51f3b --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepository.java @@ -0,0 +1,19 @@ +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.domain.criteria.ObservationUnitCriteria; +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationUnitVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; + +/** + * Breeding API observation unit + * + * @author gcornut + */ +public interface ObservationUnitRepository + extends ESFindRepository<ObservationUnitCriteria, ObservationUnitVO> { + + @Override + PaginatedList<ObservationUnitVO> find(ObservationUnitCriteria criteria); + +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepositoryImpl.java similarity index 62% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepositoryImpl.java index 783baabfcc4c5f16094be814a674cf00f8a34478..90260aae3e60f87b6c2f5503ce1547b301227b88 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepositoryImpl.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.domain.criteria.ObservationUnitCriteria; -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationUnitVO; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.BaseESRepository; +import fr.inra.urgi.faidare.domain.criteria.ObservationUnitCriteria; +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationUnitVO; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.BaseESRepository; import org.elasticsearch.client.RestHighLevelClient; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Repository; diff --git a/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ProgramRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ProgramRepository.java new file mode 100644 index 0000000000000000000000000000000000000000..093b014dcaffa26c68b8a3c77aed4bf526609f0f --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ProgramRepository.java @@ -0,0 +1,24 @@ +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.domain.criteria.ProgramCriteria; +import fr.inra.urgi.faidare.domain.data.ProgramVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.ESGetByIdRepository; + +/** + * Breeding API programs + * + * @author gcornut + */ +public interface ProgramRepository + extends ESFindRepository<ProgramCriteria, ProgramVO>, + ESGetByIdRepository<ProgramVO> { + + @Override + ProgramVO getById(String id); + + @Override + PaginatedList<ProgramVO> find(ProgramCriteria criteria); + +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ProgramRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ProgramRepositoryImpl.java similarity index 61% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/ProgramRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/ProgramRepositoryImpl.java index 95b30c2a7b24ccda072bc237de78e5543eed808e..aa7b91a5c036e8d720fee1665078b296bdbad9d5 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ProgramRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/ProgramRepositoryImpl.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.domain.criteria.ProgramCriteria; -import fr.inra.urgi.gpds.domain.data.ProgramVO; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.BaseESRepository; +import fr.inra.urgi.faidare.domain.criteria.ProgramCriteria; +import fr.inra.urgi.faidare.domain.data.ProgramVO; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.BaseESRepository; import org.elasticsearch.client.RestHighLevelClient; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Repository; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/StudyRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/StudyRepository.java similarity index 52% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/StudyRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/StudyRepository.java index 2434a21387de5b7edd4dfe6b15c629c94d1dd5bc..6ceeca9f655fea5b94548d3c32941906c976d625 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/StudyRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/StudyRepository.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.domain.criteria.StudyCriteria; -import fr.inra.urgi.gpds.domain.data.study.StudyDetailVO; -import fr.inra.urgi.gpds.domain.data.study.StudySummaryVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.ESGetByIdRepository; +import fr.inra.urgi.faidare.domain.criteria.StudyCriteria; +import fr.inra.urgi.faidare.domain.data.study.StudyDetailVO; +import fr.inra.urgi.faidare.domain.data.study.StudySummaryVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.ESGetByIdRepository; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/StudyRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/StudyRepositoryImpl.java similarity index 80% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/StudyRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/StudyRepositoryImpl.java index 301960e6a4fdc1ef04dc984c5769be06d15b1c3c..d9410a871cb1c7c0f9ab3966594b523fe6d29b3b 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/StudyRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/StudyRepositoryImpl.java @@ -1,20 +1,20 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiLocation; -import fr.inra.urgi.gpds.domain.criteria.StudyCriteria; -import fr.inra.urgi.gpds.domain.data.LocationVO; -import fr.inra.urgi.gpds.domain.data.study.StudyDetailVO; -import fr.inra.urgi.gpds.domain.data.study.StudySummaryVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentMetadata; -import fr.inra.urgi.gpds.elasticsearch.query.impl.ESGenericQueryFactory; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.ESGetByIdRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.ESGenericFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.ESGenericGetByIdRepository; +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiLocation; +import fr.inra.urgi.faidare.domain.criteria.StudyCriteria; +import fr.inra.urgi.faidare.domain.data.LocationVO; +import fr.inra.urgi.faidare.domain.data.study.StudyDetailVO; +import fr.inra.urgi.faidare.domain.data.study.StudySummaryVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentMetadata; +import fr.inra.urgi.faidare.elasticsearch.query.impl.ESGenericQueryFactory; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.ESGetByIdRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.ESGenericFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.ESGenericGetByIdRepository; import org.elasticsearch.action.search.SearchRequest; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.client.RequestOptions; diff --git a/backend/src/main/java/fr/inra/urgi/faidare/repository/es/TrialRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/TrialRepository.java new file mode 100644 index 0000000000000000000000000000000000000000..77b91b6cfb6cf21b234ab7a5448b3c1e2e6ccca7 --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/TrialRepository.java @@ -0,0 +1,24 @@ +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.domain.criteria.TrialCriteria; +import fr.inra.urgi.faidare.domain.data.TrialVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; +import fr.inra.urgi.faidare.elasticsearch.repository.ESGetByIdRepository; + +/** + * Breeding API trial + * + * @author gcornut + */ +public interface TrialRepository + extends ESFindRepository<TrialCriteria, TrialVO>, + ESGetByIdRepository<TrialVO> { + + @Override + TrialVO getById(String id); + + @Override + PaginatedList<TrialVO> find(TrialCriteria criteria); + +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/TrialRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/TrialRepositoryImpl.java similarity index 61% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/TrialRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/TrialRepositoryImpl.java index d0fd507fa8be82f00cabf5be5753c9cd117e128c..fc0ecd21b6fea54c6f82c7a6f6b3446ed8a9a21d 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/TrialRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/TrialRepositoryImpl.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.domain.criteria.TrialCriteria; -import fr.inra.urgi.gpds.domain.data.TrialVO; -import fr.inra.urgi.gpds.elasticsearch.ESRequestFactory; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.repository.impl.BaseESRepository; +import fr.inra.urgi.faidare.domain.criteria.TrialCriteria; +import fr.inra.urgi.faidare.domain.data.TrialVO; +import fr.inra.urgi.faidare.elasticsearch.ESRequestFactory; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.repository.impl.BaseESRepository; import org.elasticsearch.client.RestHighLevelClient; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Repository; diff --git a/backend/src/main/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepository.java new file mode 100644 index 0000000000000000000000000000000000000000..d5a1d0f605672b3e341e1171dc8c6302099adfa7 --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepository.java @@ -0,0 +1,11 @@ +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentSearchCriteria; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentVO; +import fr.inra.urgi.faidare.elasticsearch.repository.ESFindRepository; + +public interface XRefDocumentRepository extends ESFindRepository<XRefDocumentSearchCriteria, XRefDocumentVO> { + @Override + PaginatedList<XRefDocumentVO> find(XRefDocumentSearchCriteria criteria); +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepositoryImpl.java similarity index 82% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepositoryImpl.java index 72eddc190a12e7804573a6f3a1992605a17ce055..7406617ac841ec92aef091a567d8c1e88073fdcb 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepositoryImpl.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.config.GPDSProperties; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.response.Pagination; -import fr.inra.urgi.gpds.domain.response.PaginationImpl; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentSearchCriteria; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentVO; -import fr.inra.urgi.gpds.elasticsearch.ESResponseParser; -import fr.inra.urgi.gpds.elasticsearch.query.impl.ESGenericQueryFactory; -import fr.inra.urgi.gpds.repository.http.UserGroupsResourceClient; +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.config.FaidareProperties; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.response.Pagination; +import fr.inra.urgi.faidare.domain.response.PaginationImpl; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentSearchCriteria; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentVO; +import fr.inra.urgi.faidare.elasticsearch.ESResponseParser; +import fr.inra.urgi.faidare.elasticsearch.query.impl.ESGenericQueryFactory; +import fr.inra.urgi.faidare.repository.http.UserGroupsResourceClient; import org.elasticsearch.action.search.SearchRequest; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.client.RequestOptions; @@ -31,7 +31,7 @@ public class XRefDocumentRepositoryImpl implements XRefDocumentRepository { private static final Logger LOGGER = LoggerFactory.getLogger(XRefDocumentRepositoryImpl.class); - private final GPDSProperties properties; + private final FaidareProperties properties; private final RestHighLevelClient client; private final ESResponseParser parser; private final UserGroupsResourceClient userGroupsResourceClient; @@ -39,7 +39,7 @@ public class XRefDocumentRepositoryImpl implements XRefDocumentRepository { @Autowired public XRefDocumentRepositoryImpl( - GPDSProperties properties, + FaidareProperties properties, RestHighLevelClient client, ESResponseParser parser, UserGroupsResourceClient userGroupsResourceClient diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/file/CropOntologyRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/file/CropOntologyRepository.java similarity index 79% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/file/CropOntologyRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/file/CropOntologyRepository.java index 322c5beb56999ec993d3666076dc3e98703f1ed3..dd2514321070a863d41b3b919544926138f9d13e 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/file/CropOntologyRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/file/CropOntologyRepository.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.repository.file; +package fr.inra.urgi.faidare.repository.file; -import fr.inra.urgi.gpds.domain.data.variable.ObservationVariableVO; -import fr.inra.urgi.gpds.domain.data.variable.OntologyVO; +import fr.inra.urgi.faidare.domain.data.variable.ObservationVariableVO; +import fr.inra.urgi.faidare.domain.data.variable.OntologyVO; import java.util.List; import java.util.Set; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/file/CropOntologyRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/file/CropOntologyRepositoryImpl.java similarity index 94% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/file/CropOntologyRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/file/CropOntologyRepositoryImpl.java index fb0be144c912a63bcf8199758d5a0c59f3358a2b..c7175db985ec8820f7d913a29187f2b064be477f 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/file/CropOntologyRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/file/CropOntologyRepositoryImpl.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.repository.file; +package fr.inra.urgi.faidare.repository.file; import com.google.common.base.Strings; import com.google.common.cache.CacheBuilder; import com.google.common.cache.CacheLoader; import com.google.common.cache.LoadingCache; import com.google.common.collect.Lists; -import fr.inra.urgi.gpds.config.GPDSProperties; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiTrait; -import fr.inra.urgi.gpds.domain.data.variable.ObservationVariableVO; -import fr.inra.urgi.gpds.domain.data.variable.OntologyVO; +import fr.inra.urgi.faidare.config.FaidareProperties; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiTrait; +import fr.inra.urgi.faidare.domain.data.variable.ObservationVariableVO; +import fr.inra.urgi.faidare.domain.data.variable.OntologyVO; import org.springframework.http.ResponseEntity; import org.springframework.stereotype.Repository; import org.springframework.web.client.RestTemplate; @@ -36,14 +36,14 @@ public class CropOntologyRepositoryImpl implements CropOntologyRepository { private static final Integer CACHE_EXPIRATION_TIME = 1; private static final TimeUnit CACHE_EXPIRATION_TIME_UNIT = TimeUnit.HOURS; - private final GPDSProperties properties; + private final FaidareProperties properties; private final RestTemplate client; private final LoadingCache<String, OntologyVO[]> ontologyCache; private final LoadingCache<String, ObservationVariableVO[]> variablesByOntology; public CropOntologyRepositoryImpl( - GPDSProperties properties, + FaidareProperties properties, RestTemplate client ) { this.client = client; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/file/DataSourceRepository.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/file/DataSourceRepository.java similarity index 61% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/file/DataSourceRepository.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/file/DataSourceRepository.java index a837b724d57717fecb4b8e53d9e8da8a400d72f0..7836ede485c1e5ab21d49cddce30b63b03556b1f 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/file/DataSourceRepository.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/file/DataSourceRepository.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.repository.file; +package fr.inra.urgi.faidare.repository.file; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataSource; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataSource; import java.util.Collection; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/file/DataSourceRepositoryImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/file/DataSourceRepositoryImpl.java similarity index 92% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/file/DataSourceRepositoryImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/file/DataSourceRepositoryImpl.java index ea51690759275edb87ab330548644412f7aec0a9..28944c5cd1ef1456c627c281189a1c155b8994de 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/file/DataSourceRepositoryImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/file/DataSourceRepositoryImpl.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.repository.file; +package fr.inra.urgi.faidare.repository.file; import com.fasterxml.jackson.databind.ObjectMapper; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataSource; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataSourceImpl; -import fr.inra.urgi.gpds.domain.jsonld.data.HasGraph; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataSource; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataSourceImpl; +import fr.inra.urgi.faidare.domain.jsonld.data.HasGraph; import org.apache.tomcat.util.codec.binary.Base64; import org.springframework.stereotype.Repository; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/http/UserGroupsResourceClient.java b/backend/src/main/java/fr/inra/urgi/faidare/repository/http/UserGroupsResourceClient.java similarity index 91% rename from backend/src/main/java/fr/inra/urgi/gpds/repository/http/UserGroupsResourceClient.java rename to backend/src/main/java/fr/inra/urgi/faidare/repository/http/UserGroupsResourceClient.java index 45a981d05d46434b13e87fa444beda179321109d..0cc2dd7481f4d69976563446da2e70b7454793f9 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/http/UserGroupsResourceClient.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/repository/http/UserGroupsResourceClient.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.repository.http; +package fr.inra.urgi.faidare.repository.http; import com.google.common.base.Strings; import com.google.common.cache.Cache; import com.google.common.cache.CacheBuilder; -import fr.inra.urgi.gpds.config.GPDSProperties; -import fr.inra.urgi.gpds.filter.AuthenticationStore; +import fr.inra.urgi.faidare.config.FaidareProperties; +import fr.inra.urgi.faidare.filter.AuthenticationStore; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; @@ -36,12 +36,12 @@ public class UserGroupsResourceClient { private static final List<Integer> PUBLIC_GROUPS = Collections.singletonList(0); - private final GPDSProperties properties; + private final FaidareProperties properties; private final RestTemplate client; @Autowired public UserGroupsResourceClient( - GPDSProperties properties, + FaidareProperties properties, RestTemplate client ) { this.client = client; diff --git a/backend/src/main/java/fr/inra/urgi/faidare/service/es/GermplasmService.java b/backend/src/main/java/fr/inra/urgi/faidare/service/es/GermplasmService.java new file mode 100644 index 0000000000000000000000000000000000000000..97ac680e49c3b6f0f4aa53025fc045e393b88de2 --- /dev/null +++ b/backend/src/main/java/fr/inra/urgi/faidare/service/es/GermplasmService.java @@ -0,0 +1,24 @@ +package fr.inra.urgi.faidare.service.es; + +import fr.inra.urgi.faidare.domain.criteria.GermplasmSearchCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.data.germplasm.PedigreeVO; +import fr.inra.urgi.faidare.domain.data.germplasm.ProgenyVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; + +import java.io.File; + + +public interface GermplasmService { + + GermplasmVO getById(String germplasmDbId); + + PaginatedList<GermplasmVO> find(GermplasmSearchCriteria criteria); + + File exportCSV(GermplasmSearchCriteria criteria); + + PedigreeVO getPedigree(String germplasmDbId); + + ProgenyVO getProgeny(String germplasmDbId); + +} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/service/es/GermplasmServiceImpl.java b/backend/src/main/java/fr/inra/urgi/faidare/service/es/GermplasmServiceImpl.java similarity index 84% rename from backend/src/main/java/fr/inra/urgi/gpds/service/es/GermplasmServiceImpl.java rename to backend/src/main/java/fr/inra/urgi/faidare/service/es/GermplasmServiceImpl.java index d48999a901b3a8768b3509e96e91b3a5079c1476..2c851d636da5bff0c04491bf2e02bb61efc84e6a 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/service/es/GermplasmServiceImpl.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/service/es/GermplasmServiceImpl.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.service.es; +package fr.inra.urgi.faidare.service.es; import com.opencsv.CSVWriter; -import fr.inra.urgi.gpds.api.gnpis.v1.GnpISGermplasmController; -import fr.inra.urgi.gpds.domain.criteria.GermplasmSearchCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.data.germplasm.PedigreeVO; -import fr.inra.urgi.gpds.domain.data.germplasm.ProgenyVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.GermplasmRepository; +import fr.inra.urgi.faidare.api.gnpis.v1.GnpISGermplasmController; +import fr.inra.urgi.faidare.domain.criteria.GermplasmSearchCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.data.germplasm.PedigreeVO; +import fr.inra.urgi.faidare.domain.data.germplasm.ProgenyVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.GermplasmRepository; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.stereotype.Service; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/utils/StringFunctions.java b/backend/src/main/java/fr/inra/urgi/faidare/utils/StringFunctions.java similarity index 92% rename from backend/src/main/java/fr/inra/urgi/gpds/utils/StringFunctions.java rename to backend/src/main/java/fr/inra/urgi/faidare/utils/StringFunctions.java index 6ade272f5be5f63563bb184bb499952b6abf3082..bbe36507429ea6d856ec758751c2dba41f4bdf91 100644 --- a/backend/src/main/java/fr/inra/urgi/gpds/utils/StringFunctions.java +++ b/backend/src/main/java/fr/inra/urgi/faidare/utils/StringFunctions.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.utils; +package fr.inra.urgi.faidare.utils; import java.nio.charset.StandardCharsets; diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudyCriteria.java b/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudyCriteria.java deleted file mode 100644 index 02aaf47ff3aae8b4e0d0237a088bd5ffaaf01bb2..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/StudyCriteria.java +++ /dev/null @@ -1,9 +0,0 @@ -package fr.inra.urgi.gpds.domain.criteria; - -import fr.inra.urgi.gpds.domain.criteria.base.PaginationCriteria; - -/** - * @author gcornut - */ -public interface StudyCriteria extends PaginationCriteria { -} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/SortCriteria.java b/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/SortCriteria.java deleted file mode 100644 index c6a97dcdb8a8d0517cda754db7d04f0898b3be77..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/domain/criteria/base/SortCriteria.java +++ /dev/null @@ -1,9 +0,0 @@ -package fr.inra.urgi.gpds.domain.criteria.base; - -import fr.inra.urgi.gpds.domain.brapi.v1.criteria.BrapiSortCriteria; - -/** - * @author gcornut - */ -public interface SortCriteria extends BrapiSortCriteria { -} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepository.java b/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepository.java deleted file mode 100644 index 321ea6fd61d3fd24d81e3570b090df499be27376..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepository.java +++ /dev/null @@ -1,19 +0,0 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.domain.criteria.GermplasmAttributeCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmAttributeValueListVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; - -/** - * Breeding API germplasm attribute - * - * @author gcornut - */ -public interface GermplasmAttributeRepository - extends ESFindRepository<GermplasmAttributeCriteria, GermplasmAttributeValueListVO> { - - @Override - PaginatedList<GermplasmAttributeValueListVO> find(GermplasmAttributeCriteria criteria); - -} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/LocationRepository.java b/backend/src/main/java/fr/inra/urgi/gpds/repository/es/LocationRepository.java deleted file mode 100644 index c1fb482e06667b3e57653cc87635ac794817c581..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/LocationRepository.java +++ /dev/null @@ -1,24 +0,0 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.domain.criteria.LocationCriteria; -import fr.inra.urgi.gpds.domain.data.LocationVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.ESGetByIdRepository; - -/** - * Breeding API location - * - * @author gcornut - */ -public interface LocationRepository - extends ESFindRepository<LocationCriteria, LocationVO>, - ESGetByIdRepository<LocationVO> { - - @Override - LocationVO getById(String id); - - @Override - PaginatedList<LocationVO> find(LocationCriteria criteria); - -} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepository.java b/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepository.java deleted file mode 100644 index 156e65d0843ae06405f2447d515a40362605132e..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepository.java +++ /dev/null @@ -1,19 +0,0 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.domain.criteria.ObservationUnitCriteria; -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationUnitVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; - -/** - * Breeding API observation unit - * - * @author gcornut - */ -public interface ObservationUnitRepository - extends ESFindRepository<ObservationUnitCriteria, ObservationUnitVO> { - - @Override - PaginatedList<ObservationUnitVO> find(ObservationUnitCriteria criteria); - -} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ProgramRepository.java b/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ProgramRepository.java deleted file mode 100644 index 6a65cee93d3cc563a4feab3577b3f7b0390c1410..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/ProgramRepository.java +++ /dev/null @@ -1,24 +0,0 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.domain.criteria.ProgramCriteria; -import fr.inra.urgi.gpds.domain.data.ProgramVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.ESGetByIdRepository; - -/** - * Breeding API programs - * - * @author gcornut - */ -public interface ProgramRepository - extends ESFindRepository<ProgramCriteria, ProgramVO>, - ESGetByIdRepository<ProgramVO> { - - @Override - ProgramVO getById(String id); - - @Override - PaginatedList<ProgramVO> find(ProgramCriteria criteria); - -} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/TrialRepository.java b/backend/src/main/java/fr/inra/urgi/gpds/repository/es/TrialRepository.java deleted file mode 100644 index 87cc11a3bc364e0088eef92c55f274e89ec7e3d3..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/TrialRepository.java +++ /dev/null @@ -1,24 +0,0 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.domain.criteria.TrialCriteria; -import fr.inra.urgi.gpds.domain.data.TrialVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; -import fr.inra.urgi.gpds.elasticsearch.repository.ESGetByIdRepository; - -/** - * Breeding API trial - * - * @author gcornut - */ -public interface TrialRepository - extends ESFindRepository<TrialCriteria, TrialVO>, - ESGetByIdRepository<TrialVO> { - - @Override - TrialVO getById(String id); - - @Override - PaginatedList<TrialVO> find(TrialCriteria criteria); - -} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepository.java b/backend/src/main/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepository.java deleted file mode 100644 index 727972913baeeb6d4924fecf9fbc8b88c7ce5dc6..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepository.java +++ /dev/null @@ -1,11 +0,0 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentSearchCriteria; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentVO; -import fr.inra.urgi.gpds.elasticsearch.repository.ESFindRepository; - -public interface XRefDocumentRepository extends ESFindRepository<XRefDocumentSearchCriteria, XRefDocumentVO> { - @Override - PaginatedList<XRefDocumentVO> find(XRefDocumentSearchCriteria criteria); -} diff --git a/backend/src/main/java/fr/inra/urgi/gpds/service/es/GermplasmService.java b/backend/src/main/java/fr/inra/urgi/gpds/service/es/GermplasmService.java deleted file mode 100644 index dc79a190d895bebbd1007560752c622988747753..0000000000000000000000000000000000000000 --- a/backend/src/main/java/fr/inra/urgi/gpds/service/es/GermplasmService.java +++ /dev/null @@ -1,24 +0,0 @@ -package fr.inra.urgi.gpds.service.es; - -import fr.inra.urgi.gpds.domain.criteria.GermplasmSearchCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.data.germplasm.PedigreeVO; -import fr.inra.urgi.gpds.domain.data.germplasm.ProgenyVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; - -import java.io.File; - - -public interface GermplasmService { - - GermplasmVO getById(String germplasmDbId); - - PaginatedList<GermplasmVO> find(GermplasmSearchCriteria criteria); - - File exportCSV(GermplasmSearchCriteria criteria); - - PedigreeVO getPedigree(String germplasmDbId); - - ProgenyVO getProgeny(String germplasmDbId); - -} diff --git a/backend/src/main/resources/application.yml b/backend/src/main/resources/application.yml index 72884e5f8dcdc90cd8520ba2071eeeab1762dec3..b8d467fdbcee5aa21c11e6734d428951f45ad81d 100644 --- a/backend/src/main/resources/application.yml +++ b/backend/src/main/resources/application.yml @@ -19,7 +19,7 @@ logging.level: web.client.RestTemplate: DEBUG fr.inra: DEBUG -gpds: +faidare: elasticsearch-alias-template: gnpis_{source}_{documentType}_5432_krusty-group{groupId} @@ -43,5 +43,5 @@ server: - text/css port: 8380 servlet: - context-path: /gpds-dev + context-path: /faidare-dev diff --git a/backend/src/main/resources/bootstrap.yml b/backend/src/main/resources/bootstrap.yml index 9e6ab0a5d38911eba268a9612fbeeaa3f4386135..c2bfdecd7d438b2c41be0663e17d758f487eaa0a 100644 --- a/backend/src/main/resources/bootstrap.yml +++ b/backend/src/main/resources/bootstrap.yml @@ -1,5 +1,5 @@ spring: - application.name: gpds + application.name: faidare cloud: config: uri: ${SPRING_CONFIG_URI:http://localhost:8888} diff --git a/backend/src/main/resources/fr/inra/urgi/gpds/repository/file/datasources.jsonld b/backend/src/main/resources/fr/inra/urgi/faidare/repository/file/datasources.jsonld similarity index 100% rename from backend/src/main/resources/fr/inra/urgi/gpds/repository/file/datasources.jsonld rename to backend/src/main/resources/fr/inra/urgi/faidare/repository/file/datasources.jsonld diff --git a/backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/CIRAD.jpg b/backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/CIRAD.jpg similarity index 100% rename from backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/CIRAD.jpg rename to backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/CIRAD.jpg diff --git a/backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/EU-SOL_40h.png b/backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/EU-SOL_40h.png similarity index 100% rename from backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/EU-SOL_40h.png rename to backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/EU-SOL_40h.png diff --git a/backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/GnpIS.png b/backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/GnpIS.png similarity index 100% rename from backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/GnpIS.png rename to backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/GnpIS.png diff --git a/backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/NIB_40h.png b/backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/NIB_40h.png similarity index 100% rename from backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/NIB_40h.png rename to backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/NIB_40h.png diff --git a/backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/VIB_40h.png b/backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/VIB_40h.png similarity index 100% rename from backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/VIB_40h.png rename to backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/VIB_40h.png diff --git a/backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/biodata_40h.png b/backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/biodata_40h.png similarity index 100% rename from backend/src/main/resources/fr/inra/urgi/gpds/repository/file/logos/biodata_40h.png rename to backend/src/main/resources/fr/inra/urgi/faidare/repository/file/logos/biodata_40h.png diff --git a/backend/src/test/java/fr/inra/urgi/gpds/ApplicationTest.java b/backend/src/test/java/fr/inra/urgi/faidare/ApplicationTest.java similarity index 94% rename from backend/src/test/java/fr/inra/urgi/gpds/ApplicationTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/ApplicationTest.java index 6dd56395464d54328db360a9fce729625e8154a9..e1fbec0d8c8eb100cc7cd2e51056c64d834ad6dc 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/ApplicationTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/ApplicationTest.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds; +package fr.inra.urgi.faidare; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiExceptionHandlerTest.java b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiExceptionHandlerTest.java similarity index 96% rename from backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiExceptionHandlerTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiExceptionHandlerTest.java index ea5eba02bebe34e47ac30b147369c39dd29c00cd..5df9774e0152797ccb6373d204b7ce81e7ff5433 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/BrapiExceptionHandlerTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/BrapiExceptionHandlerTest.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.repository.es.GermplasmAttributeRepository; -import fr.inra.urgi.gpds.service.es.GermplasmService; +import fr.inra.urgi.faidare.repository.es.GermplasmAttributeRepository; +import fr.inra.urgi.faidare.service.es.GermplasmService; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/CallsControllerTest.java b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/CallsControllerTest.java similarity index 99% rename from backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/CallsControllerTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/CallsControllerTest.java index 9f7f1fc91ecd63b593afdc8cc6de530916242c65..9c709952eb71e69dc1965a6bd902dfb131c66417 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/CallsControllerTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/CallsControllerTest.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/GermplasmControllerTest.java b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/GermplasmControllerTest.java similarity index 92% rename from backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/GermplasmControllerTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/GermplasmControllerTest.java index a9db63472f5548805852e8a3b673b8cc7429d160..12fd243970bf52a90c9e0c9610b3280ffb5c8d1f 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/GermplasmControllerTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/GermplasmControllerTest.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.api.brapi.v1; - -import fr.inra.urgi.gpds.domain.data.germplasm.CollPopVO; -import fr.inra.urgi.gpds.domain.data.germplasm.DonorVO; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.data.germplasm.ProgenyVO; -import fr.inra.urgi.gpds.repository.es.GermplasmAttributeRepository; -import fr.inra.urgi.gpds.service.es.GermplasmService; +package fr.inra.urgi.faidare.api.brapi.v1; + +import fr.inra.urgi.faidare.domain.data.germplasm.CollPopVO; +import fr.inra.urgi.faidare.domain.data.germplasm.DonorVO; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.data.germplasm.ProgenyVO; +import fr.inra.urgi.faidare.repository.es.GermplasmAttributeRepository; +import fr.inra.urgi.faidare.service.es.GermplasmService; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/LocationControllerTest.java b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/LocationControllerTest.java similarity index 95% rename from backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/LocationControllerTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/LocationControllerTest.java index b35ebba399e76764fd35a489f0192910a841358d..256292d8c8d1d63b959b0b7c36fb8f838d739a3f 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/LocationControllerTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/LocationControllerTest.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.domain.data.LocationVO; -import fr.inra.urgi.gpds.repository.es.LocationRepository; +import fr.inra.urgi.faidare.domain.data.LocationVO; +import fr.inra.urgi.faidare.repository.es.LocationRepository; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/ObservationVariableControllerTest.java b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/ObservationVariableControllerTest.java similarity index 94% rename from backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/ObservationVariableControllerTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/ObservationVariableControllerTest.java index e2b6bab1b9bef4ed79d7bcfcdf16c028777da9db..bec00d617cb13a836d8a097e401300acf19f6f9c 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/ObservationVariableControllerTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/ObservationVariableControllerTest.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.domain.data.variable.ObservationVariableVO; -import fr.inra.urgi.gpds.repository.file.CropOntologyRepository; +import fr.inra.urgi.faidare.domain.data.variable.ObservationVariableVO; +import fr.inra.urgi.faidare.repository.file.CropOntologyRepository; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/ProgramControllerTest.java b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/ProgramControllerTest.java similarity index 95% rename from backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/ProgramControllerTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/ProgramControllerTest.java index 4042d1e7a9e001b9d6ccabe05e1054bd2ae25d5d..e609dc275e07f37db3a8748a3744a5f1f5b2924a 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/ProgramControllerTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/ProgramControllerTest.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.api.brapi.v1; +package fr.inra.urgi.faidare.api.brapi.v1; -import fr.inra.urgi.gpds.domain.data.ProgramVO; -import fr.inra.urgi.gpds.repository.es.ProgramRepository; +import fr.inra.urgi.faidare.domain.data.ProgramVO; +import fr.inra.urgi.faidare.repository.es.ProgramRepository; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/StudyControllerTest.java b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/StudyControllerTest.java similarity index 87% rename from backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/StudyControllerTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/StudyControllerTest.java index de2d6066455824295b1ca3f0e912c1cecb378a54..d6acb3df6e4a86f8ddff5c1bafdd840c262c6764 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/api/brapi/v1/StudyControllerTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/api/brapi/v1/StudyControllerTest.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.api.brapi.v1; - -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationUnitVO; -import fr.inra.urgi.gpds.domain.data.study.StudyDetailVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.response.Pagination; -import fr.inra.urgi.gpds.domain.response.PaginationImpl; -import fr.inra.urgi.gpds.repository.es.GermplasmRepository; -import fr.inra.urgi.gpds.repository.es.ObservationUnitRepository; -import fr.inra.urgi.gpds.repository.es.StudyRepository; -import fr.inra.urgi.gpds.repository.file.CropOntologyRepository; +package fr.inra.urgi.faidare.api.brapi.v1; + +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationUnitVO; +import fr.inra.urgi.faidare.domain.data.study.StudyDetailVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.response.Pagination; +import fr.inra.urgi.faidare.domain.response.PaginationImpl; +import fr.inra.urgi.faidare.repository.es.GermplasmRepository; +import fr.inra.urgi.faidare.repository.es.ObservationUnitRepository; +import fr.inra.urgi.faidare.repository.es.StudyRepository; +import fr.inra.urgi.faidare.repository.file.CropOntologyRepository; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.springframework.beans.factory.annotation.Autowired; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISGermplasmControllerTest.java b/backend/src/test/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISGermplasmControllerTest.java similarity index 91% rename from backend/src/test/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISGermplasmControllerTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISGermplasmControllerTest.java index a446c818dd4c0ddbf0aab46772cf99a611ad31ee..521f6af3273b56dfb0d6fa1ef0c4efb0bfd41e68 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/api/gnpis/v1/GnpISGermplasmControllerTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/api/gnpis/v1/GnpISGermplasmControllerTest.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.api.gnpis.v1; - -import fr.inra.urgi.gpds.domain.criteria.GermplasmGETSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.GermplasmSearchCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.CollPopVO; -import fr.inra.urgi.gpds.domain.data.germplasm.DonorVO; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.service.es.GermplasmService; +package fr.inra.urgi.faidare.api.gnpis.v1; + +import fr.inra.urgi.faidare.domain.criteria.GermplasmGETSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.GermplasmSearchCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.CollPopVO; +import fr.inra.urgi.faidare.domain.data.germplasm.DonorVO; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.service.es.GermplasmService; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.mockito.ArgumentCaptor; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/domain/brapi/v1/BrapiMappingTest.java b/backend/src/test/java/fr/inra/urgi/faidare/domain/brapi/v1/BrapiMappingTest.java similarity index 90% rename from backend/src/test/java/fr/inra/urgi/gpds/domain/brapi/v1/BrapiMappingTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/domain/brapi/v1/BrapiMappingTest.java index 2b2424ce68a89669d8f4aa6113b944caf3de0c2d..454a3bf75162dcfd43000da6efdef77e8aad2672 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/domain/brapi/v1/BrapiMappingTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/domain/brapi/v1/BrapiMappingTest.java @@ -1,21 +1,21 @@ -package fr.inra.urgi.gpds.domain.brapi.v1; +package fr.inra.urgi.faidare.domain.brapi.v1; import com.fasterxml.jackson.annotation.JsonInclude; import com.fasterxml.jackson.databind.MapperFeature; import com.fasterxml.jackson.databind.ObjectMapper; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiAdditionalInfo; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiTrial; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiTrialStudy; -import fr.inra.urgi.gpds.domain.criteria.ProgramCriteria; -import fr.inra.urgi.gpds.domain.data.ProgramVO; -import fr.inra.urgi.gpds.domain.data.TrialDatasetAuthorshipVO; -import fr.inra.urgi.gpds.domain.data.TrialStudySummaryVO; -import fr.inra.urgi.gpds.domain.data.TrialVO; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationUnitVO; -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationUnitXRefVO; -import fr.inra.urgi.gpds.domain.data.variable.OntologyVO; -import fr.inra.urgi.gpds.elasticsearch.query.impl.ESGenericQueryFactoryTest; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiAdditionalInfo; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiTrial; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiTrialStudy; +import fr.inra.urgi.faidare.domain.criteria.ProgramCriteria; +import fr.inra.urgi.faidare.domain.data.ProgramVO; +import fr.inra.urgi.faidare.domain.data.TrialDatasetAuthorshipVO; +import fr.inra.urgi.faidare.domain.data.TrialStudySummaryVO; +import fr.inra.urgi.faidare.domain.data.TrialVO; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationUnitVO; +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationUnitXRefVO; +import fr.inra.urgi.faidare.domain.data.variable.OntologyVO; +import fr.inra.urgi.faidare.elasticsearch.query.impl.ESGenericQueryFactoryTest; import org.assertj.core.api.Condition; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationValidatorTest.java b/backend/src/test/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationValidatorTest.java similarity index 98% rename from backend/src/test/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationValidatorTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationValidatorTest.java index a700394985b67a156dc8ac63a1d809a31c82504c..368e64ce6fecc837d9d6b0e53d3a408736dee789 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/domain/criteria/base/PaginationValidatorTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/domain/criteria/base/PaginationValidatorTest.java @@ -1,4 +1,4 @@ -package fr.inra.urgi.gpds.domain.criteria.base; +package fr.inra.urgi.faidare.domain.criteria.base; import org.assertj.core.api.Assertions; import org.junit.jupiter.api.BeforeAll; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/domain/response/ApiResponseTest.java b/backend/src/test/java/fr/inra/urgi/faidare/domain/response/ApiResponseTest.java similarity index 94% rename from backend/src/test/java/fr/inra/urgi/gpds/domain/response/ApiResponseTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/domain/response/ApiResponseTest.java index ce91e520a3d69227aa4388713a45f043d2386828..be5a654b340bf44ea57ede0fb5b610bb524d4c4f 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/domain/response/ApiResponseTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/domain/response/ApiResponseTest.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.domain.response; +package fr.inra.urgi.faidare.domain.response; import com.fasterxml.jackson.databind.MapperFeature; import com.fasterxml.jackson.databind.ObjectMapper; -import fr.inra.urgi.gpds.api.brapi.v1.exception.BrapiPaginationException; -import fr.inra.urgi.gpds.domain.JSONView; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiListResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiResponse; -import fr.inra.urgi.gpds.domain.brapi.v1.response.BrapiStatus; -import fr.inra.urgi.gpds.elasticsearch.query.impl.ESGenericQueryFactoryTest; +import fr.inra.urgi.faidare.api.brapi.v1.exception.BrapiPaginationException; +import fr.inra.urgi.faidare.domain.JSONView; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiListResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiResponse; +import fr.inra.urgi.faidare.domain.brapi.v1.response.BrapiStatus; +import fr.inra.urgi.faidare.elasticsearch.query.impl.ESGenericQueryFactoryTest; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/ESRequestFactoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/ESRequestFactoryTest.java similarity index 93% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/ESRequestFactoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/ESRequestFactoryTest.java index 942c470ee7fa014bfde9ced7735fd0f128c5696c..d7399f732cf054257135f5ac56156b29749656b0 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/ESRequestFactoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/ESRequestFactoryTest.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.elasticsearch; +package fr.inra.urgi.faidare.elasticsearch; import com.fasterxml.jackson.databind.util.ArrayIterator; -import fr.inra.urgi.gpds.config.GPDSProperties; -import fr.inra.urgi.gpds.repository.http.UserGroupsResourceClient; +import fr.inra.urgi.faidare.config.FaidareProperties; +import fr.inra.urgi.faidare.repository.http.UserGroupsResourceClient; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.mockito.InjectMocks; @@ -26,7 +26,7 @@ class ESRequestFactoryTest { ESRequestFactory requestFactory; @Mock - GPDSProperties properties; + FaidareProperties properties; @Mock UserGroupsResourceClient userGroupsResourceClient; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/ESResponseParserTest.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/ESResponseParserTest.java similarity index 98% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/ESResponseParserTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/ESResponseParserTest.java index cf5b0edf862e80e49c85355a6c4eddc58f1146a2..ad44814021f823ad695e53feacf2a586860d9041 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/ESResponseParserTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/ESResponseParserTest.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.elasticsearch; +package fr.inra.urgi.faidare.elasticsearch; import com.fasterxml.jackson.databind.ObjectMapper; -import fr.inra.urgi.gpds.elasticsearch.fixture.DocumentObject; +import fr.inra.urgi.faidare.elasticsearch.fixture.DocumentObject; import org.assertj.core.util.Lists; import org.elasticsearch.action.search.SearchResponse; import org.elasticsearch.common.bytes.BytesReference; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/AnnotatedCriteriaMapperTest.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/AnnotatedCriteriaMapperTest.java similarity index 91% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/AnnotatedCriteriaMapperTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/AnnotatedCriteriaMapperTest.java index 7fdce6f23df24e55180bb79701a5a2c8f5a32651..6b12495222ac45fc7a418d53831b2c391ba636fb 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/AnnotatedCriteriaMapperTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/AnnotatedCriteriaMapperTest.java @@ -1,14 +1,14 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria; +package fr.inra.urgi.faidare.elasticsearch.criteria; import com.google.common.collect.ImmutableList; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.NoDocumentMapping; -import fr.inra.urgi.gpds.elasticsearch.criteria.fixture.*; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMapping; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingCriterion; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTree; -import fr.inra.urgi.gpds.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.NoDocumentMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.fixture.*; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMapping; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingCriterion; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTree; +import fr.inra.urgi.faidare.elasticsearch.criteria.mapping.CriteriaMappingTreeNode; import org.elasticsearch.index.query.RangeQueryBuilder; import org.elasticsearch.index.query.TermQueryBuilder; import org.junit.jupiter.api.Assertions; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/ComplexAnnotatedCriteria.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/ComplexAnnotatedCriteria.java similarity index 82% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/ComplexAnnotatedCriteria.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/ComplexAnnotatedCriteria.java index c9303c5ade09d7964b0041962730a9f32f8a1ad9..2f7e18d4eb075904bd07f93bb75c5f42b7d35d8b 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/ComplexAnnotatedCriteria.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/ComplexAnnotatedCriteria.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.fixture; +package fr.inra.urgi.faidare.elasticsearch.criteria.fixture; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.QueryType; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.QueryType; import org.elasticsearch.index.query.RangeQueryBuilder; import java.util.List; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/DocumentObject.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/DocumentObject.java similarity index 86% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/DocumentObject.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/DocumentObject.java index 1e2964851d61b75dded24c8a4936c728a94c5b66..5e92b1373aea747a950b58b55f3aada464d36ff1 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/DocumentObject.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/DocumentObject.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.fixture; +package fr.inra.urgi.faidare.elasticsearch.criteria.fixture; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Nested; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Nested; import java.util.List; diff --git a/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectBeanPropertyCriteria.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectBeanPropertyCriteria.java new file mode 100644 index 0000000000000000000000000000000000000000..70d888105018e909d9849f2f5c762ab8acf7ff9d --- /dev/null +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectBeanPropertyCriteria.java @@ -0,0 +1,16 @@ +package fr.inra.urgi.faidare.elasticsearch.criteria.fixture; + +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; + +/** + * @author gcornut + */ +@CriteriaForDocument(DocumentObject.class) +public class IncorrectBeanPropertyCriteria { + + // Missing getter & setter here: + @DocumentPath("field1") + String criteria1; + +} diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectClassAnnotationCriteria.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectClassAnnotationCriteria.java similarity index 61% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectClassAnnotationCriteria.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectClassAnnotationCriteria.java index 0c5332780664230fd8018956a589a4f11ed6005f..af53f6b366e4d5a720ff9c7f91cef31580d63639 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectClassAnnotationCriteria.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectClassAnnotationCriteria.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.fixture; +package fr.inra.urgi.faidare.elasticsearch.criteria.fixture; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; /** * Criteria missing the {@link CriteriaForDocument} annotation diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectDocumentPathCriteria.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectDocumentPathCriteria.java similarity index 64% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectDocumentPathCriteria.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectDocumentPathCriteria.java index 01a3d9d67b81addcc9f3cc79359729aa9e7bd268..dea944e8cf449d631d41270e0db1291621c7e3ab 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectDocumentPathCriteria.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectDocumentPathCriteria.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.fixture; +package fr.inra.urgi.faidare.elasticsearch.criteria.fixture; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; /** * @author gcornut diff --git a/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectEmptyCriteria.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectEmptyCriteria.java new file mode 100644 index 0000000000000000000000000000000000000000..e8a2a04ea81a5af9b6cfbe1e26843a14a4491718 --- /dev/null +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectEmptyCriteria.java @@ -0,0 +1,15 @@ +package fr.inra.urgi.faidare.elasticsearch.criteria.fixture; + +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.NoDocumentMapping; + +/** + * @author gcornut + */ +@CriteriaForDocument(DocumentObject.class) +public class IncorrectEmptyCriteria { + + @NoDocumentMapping + String hiddenCriteria; + +} diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectFieldAnnotationCriteria.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectFieldAnnotationCriteria.java similarity index 70% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectFieldAnnotationCriteria.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectFieldAnnotationCriteria.java index aad764ef4aecef9c68c17eda74bbeac13bc24474..9ea80291acdd667fa8fa985af33bac8a6b983a8e 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectFieldAnnotationCriteria.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/criteria/fixture/IncorrectFieldAnnotationCriteria.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.fixture; +package fr.inra.urgi.faidare.elasticsearch.criteria.fixture; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; /** * @author gcornut diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentAnnotationUtilTest.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentAnnotationUtilTest.java similarity index 92% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentAnnotationUtilTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentAnnotationUtilTest.java index 9f8c04c8a5d9d2be13fbb68dabcc330aa16e9584..b8a86407533fef5f21831fd31f01f753e8524f29 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/DocumentAnnotationUtilTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/DocumentAnnotationUtilTest.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.elasticsearch.document; +package fr.inra.urgi.faidare.elasticsearch.document; import com.google.common.collect.ImmutableList; -import fr.inra.urgi.gpds.elasticsearch.document.fixture.ComplexDocument; -import fr.inra.urgi.gpds.elasticsearch.document.fixture.IncorrectMissingAnnotationDocument; -import fr.inra.urgi.gpds.elasticsearch.document.fixture.IncorrectNestedAnnotationDocument; -import fr.inra.urgi.gpds.elasticsearch.document.fixture.SimpleDocument; +import fr.inra.urgi.faidare.elasticsearch.document.fixture.ComplexDocument; +import fr.inra.urgi.faidare.elasticsearch.document.fixture.IncorrectMissingAnnotationDocument; +import fr.inra.urgi.faidare.elasticsearch.document.fixture.IncorrectNestedAnnotationDocument; +import fr.inra.urgi.faidare.elasticsearch.document.fixture.SimpleDocument; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.Test; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/ComplexDocument.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/ComplexDocument.java similarity index 83% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/ComplexDocument.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/ComplexDocument.java index ce4b0148e92d8b00a020d1306d16d31524f32f1d..dd9a2c789623a79ab4101136bdbd08e21fb82703 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/ComplexDocument.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/ComplexDocument.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.elasticsearch.document.fixture; +package fr.inra.urgi.faidare.elasticsearch.document.fixture; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Nested; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Nested; import java.util.List; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/IncorrectMissingAnnotationDocument.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/IncorrectMissingAnnotationDocument.java similarity index 51% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/IncorrectMissingAnnotationDocument.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/IncorrectMissingAnnotationDocument.java index d3e04360e0a1d70eeb37378bbfe45da78504c780..0397f46e7e313d7ae8817320171c4ce32dd145a8 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/IncorrectMissingAnnotationDocument.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/IncorrectMissingAnnotationDocument.java @@ -1,6 +1,6 @@ -package fr.inra.urgi.gpds.elasticsearch.document.fixture; +package fr.inra.urgi.faidare.elasticsearch.document.fixture; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; /** * Document class missing the {@link Document} annotation diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/IncorrectNestedAnnotationDocument.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/IncorrectNestedAnnotationDocument.java similarity index 70% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/IncorrectNestedAnnotationDocument.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/IncorrectNestedAnnotationDocument.java index abe9de75b3a711d7448f3e6c699ccf58e9289f90..9bac3333635196b9cc4597e53ff4fb1879e45678 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/IncorrectNestedAnnotationDocument.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/IncorrectNestedAnnotationDocument.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.elasticsearch.document.fixture; +package fr.inra.urgi.faidare.elasticsearch.document.fixture; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Nested; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Nested; import java.util.List; diff --git a/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/SimpleDocument.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/SimpleDocument.java new file mode 100644 index 0000000000000000000000000000000000000000..febc945e54eedda7c6681ece22a0037871109866 --- /dev/null +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/document/fixture/SimpleDocument.java @@ -0,0 +1,13 @@ +package fr.inra.urgi.faidare.elasticsearch.document.fixture; + +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; + +/** + * @author gcornut + */ +@Document(type = "dataObject3") +public class SimpleDocument { + @Id + String id; +} diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/fixture/DocumentObject.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/fixture/DocumentObject.java similarity index 75% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/fixture/DocumentObject.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/fixture/DocumentObject.java index eeb47d79d8bd9629fb32cc20b522b9e0096dd982..ca9df8961432c1257cc350a7043ee9dba6f3b527 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/fixture/DocumentObject.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/fixture/DocumentObject.java @@ -1,8 +1,8 @@ -package fr.inra.urgi.gpds.elasticsearch.fixture; +package fr.inra.urgi.faidare.elasticsearch.fixture; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Id; import java.util.List; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/query/impl/ESGenericQueryFactoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/query/impl/ESGenericQueryFactoryTest.java similarity index 93% rename from backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/query/impl/ESGenericQueryFactoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/query/impl/ESGenericQueryFactoryTest.java index 1f5df4edc74150fe7f18e98929d9a4b04aac22c0..304d2215bc94ac0555eb486386436f12eb51e882 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/query/impl/ESGenericQueryFactoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/elasticsearch/query/impl/ESGenericQueryFactoryTest.java @@ -1,20 +1,20 @@ -package fr.inra.urgi.gpds.elasticsearch.query.impl; +package fr.inra.urgi.faidare.elasticsearch.query.impl; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; import com.google.common.collect.Sets; import com.google.common.io.CharStreams; -import fr.inra.urgi.gpds.domain.criteria.LocationCriteria; -import fr.inra.urgi.gpds.domain.criteria.ObservationUnitCriteria; -import fr.inra.urgi.gpds.domain.criteria.ProgramCriteria; -import fr.inra.urgi.gpds.domain.criteria.StudySearchCriteria; -import fr.inra.urgi.gpds.domain.datadiscovery.criteria.DataDiscoveryCriteria; -import fr.inra.urgi.gpds.domain.datadiscovery.criteria.DataDiscoveryCriteriaImpl; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.QueryType; -import fr.inra.urgi.gpds.elasticsearch.criteria.fixture.ComplexAnnotatedCriteria; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; +import fr.inra.urgi.faidare.domain.criteria.LocationCriteria; +import fr.inra.urgi.faidare.domain.criteria.ObservationUnitCriteria; +import fr.inra.urgi.faidare.domain.criteria.ProgramCriteria; +import fr.inra.urgi.faidare.domain.criteria.StudySearchCriteria; +import fr.inra.urgi.faidare.domain.datadiscovery.criteria.DataDiscoveryCriteria; +import fr.inra.urgi.faidare.domain.datadiscovery.criteria.DataDiscoveryCriteriaImpl; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.CriteriaForDocument; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.DocumentPath; +import fr.inra.urgi.faidare.elasticsearch.criteria.annotation.QueryType; +import fr.inra.urgi.faidare.elasticsearch.criteria.fixture.ComplexAnnotatedCriteria; +import fr.inra.urgi.faidare.elasticsearch.document.annotation.Document; import org.elasticsearch.index.query.QueryBuilder; import org.elasticsearch.index.query.RangeQueryBuilder; import org.elasticsearch.index.query.ScriptQueryBuilder; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/filter/AngularRouteFilterTest.java b/backend/src/test/java/fr/inra/urgi/faidare/filter/AngularRouteFilterTest.java similarity index 93% rename from backend/src/test/java/fr/inra/urgi/gpds/filter/AngularRouteFilterTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/filter/AngularRouteFilterTest.java index 12043dc7ec5c08bf26baff6d1ae0113ee4c4e3cd..4042699284a9e2b28568572b0f5692bedb6481ca 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/filter/AngularRouteFilterTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/filter/AngularRouteFilterTest.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.filter; +package fr.inra.urgi.faidare.filter; -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.config.SecurityConfig; +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.config.SecurityConfig; import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.extension.ExtendWith; import org.junit.jupiter.params.ParameterizedTest; @@ -87,10 +87,10 @@ class AngularRouteFilterTest { " <base href=\"./\">\n" + "</html>"; String indexAfter = "<html>\n" + - " <base href=\"/gnpis-test/gpds/\">\n" + + " <base href=\"/gnpis-test/faidare/\">\n" + "</html>"; - ReflectionTestUtils.setField(filter, "serverContextPath", "/gnpis-test/gpds"); + ReflectionTestUtils.setField(filter, "serverContextPath", "/gnpis-test/faidare"); Resource mockResource = mock(Resource.class); when(mockResource.getInputStream()) diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepositoryTest.java similarity index 94% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepositoryTest.java index c91574bff41ac03a33a89ac8310770abb6f88e3d..5fc42ceb9a08d678300e98a727aed284104473c7 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/DataDiscoveryRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/DataDiscoveryRepositoryTest.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.datadiscovery.criteria.DataDiscoveryCriteriaImpl; -import fr.inra.urgi.gpds.domain.datadiscovery.data.DataDiscoveryDocument; -import fr.inra.urgi.gpds.domain.datadiscovery.data.Facet; -import fr.inra.urgi.gpds.domain.datadiscovery.data.FacetTerm; -import fr.inra.urgi.gpds.domain.datadiscovery.response.DataDiscoveryResponse; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.datadiscovery.criteria.DataDiscoveryCriteriaImpl; +import fr.inra.urgi.faidare.domain.datadiscovery.data.DataDiscoveryDocument; +import fr.inra.urgi.faidare.domain.datadiscovery.data.Facet; +import fr.inra.urgi.faidare.domain.datadiscovery.data.FacetTerm; +import fr.inra.urgi.faidare.domain.datadiscovery.response.DataDiscoveryResponse; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.elasticsearch.search.sort.SortOrder; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepositoryTest.java similarity index 89% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepositoryTest.java index cc43da350a04289e1f9d980eba10ec76c8aff617..9a7929b1874167a3b4aedd5a240f04d10532228e 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/GermplasmAttributeRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/GermplasmAttributeRepositoryTest.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.repository.es; - -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.brapi.v1.data.BrapiGermplasmAttributeValue; -import fr.inra.urgi.gpds.domain.criteria.GermplasmAttributeCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmAttributeValueListVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +package fr.inra.urgi.faidare.repository.es; + +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.brapi.v1.data.BrapiGermplasmAttributeValue; +import fr.inra.urgi.faidare.domain.criteria.GermplasmAttributeCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmAttributeValueListVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.TestInstance; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/GermplasmRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/GermplasmRepositoryTest.java similarity index 95% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/GermplasmRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/GermplasmRepositoryTest.java index ae608d3137122445a5444d59769ed112f397531b..42190131c14ef1b9889611311d0e2812a3990be0 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/GermplasmRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/GermplasmRepositoryTest.java @@ -1,17 +1,17 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.ObjectMapper; -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.criteria.GermplasmGETSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.GermplasmPOSTSearchCriteria; -import fr.inra.urgi.gpds.domain.criteria.GermplasmSearchCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.domain.data.germplasm.PedigreeVO; -import fr.inra.urgi.gpds.domain.data.germplasm.ProgenyVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.response.Pagination; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.criteria.GermplasmGETSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.GermplasmPOSTSearchCriteria; +import fr.inra.urgi.faidare.domain.criteria.GermplasmSearchCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.domain.data.germplasm.PedigreeVO; +import fr.inra.urgi.faidare.domain.data.germplasm.ProgenyVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.response.Pagination; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.assertj.core.util.Lists; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/LocationRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/LocationRepositoryTest.java similarity index 92% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/LocationRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/LocationRepositoryTest.java index b45c4e968df13513eb59def78b2c0fe7170e44c3..879ce4105cbc950fe3e95783f4c3c070f85114a3 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/LocationRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/LocationRepositoryTest.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; import com.google.common.collect.Sets; -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.criteria.LocationCriteria; -import fr.inra.urgi.gpds.domain.data.LocationVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.criteria.LocationCriteria; +import fr.inra.urgi.faidare.domain.data.LocationVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.TestInstance; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepositoryTest.java similarity index 95% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepositoryTest.java index 9c29177b269a389e6f7604fddab1a08a25bcb342..783b475780600f89a4821a4da74340f1735b07c6 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/ObservationUnitRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/ObservationUnitRepositoryTest.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; import com.google.common.collect.Sets; -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.criteria.ObservationUnitCriteria; -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationUnitVO; -import fr.inra.urgi.gpds.domain.data.phenotype.ObservationVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.criteria.ObservationUnitCriteria; +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationUnitVO; +import fr.inra.urgi.faidare.domain.data.phenotype.ObservationVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.assertj.core.api.Condition; import org.joda.time.DateTime; import org.junit.jupiter.api.BeforeAll; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/ProgramRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/ProgramRepositoryTest.java similarity index 90% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/ProgramRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/ProgramRepositoryTest.java index 1acecad51be07a593d81367d3b48a591425b7f32..ddc86daae6cc8c61751c854839880b7e4e48020a 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/ProgramRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/ProgramRepositoryTest.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.criteria.ProgramCriteria; -import fr.inra.urgi.gpds.domain.data.ProgramVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.criteria.ProgramCriteria; +import fr.inra.urgi.faidare.domain.data.ProgramVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.TestInstance; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/StudyRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/StudyRepositoryTest.java similarity index 93% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/StudyRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/StudyRepositoryTest.java index 1c330a614e1ce70e54bcc22c35faa74e8139212c..42b2328714b627b7b2fc2099b3614257f61c7b49 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/StudyRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/StudyRepositoryTest.java @@ -1,13 +1,13 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; import com.google.common.collect.Sets; -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.criteria.StudySearchCriteria; -import fr.inra.urgi.gpds.domain.data.LocationVO; -import fr.inra.urgi.gpds.domain.data.study.StudyDetailVO; -import fr.inra.urgi.gpds.domain.data.study.StudySummaryVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.criteria.StudySearchCriteria; +import fr.inra.urgi.faidare.domain.data.LocationVO; +import fr.inra.urgi.faidare.domain.data.study.StudyDetailVO; +import fr.inra.urgi.faidare.domain.data.study.StudySummaryVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.assertj.core.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/TrialRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/TrialRepositoryTest.java similarity index 90% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/TrialRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/TrialRepositoryTest.java index 69fcb4886908f55182c2fa52de3d2f0a8a269103..1c7416b8e867f8a06e799c11ec1b47560214f328 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/TrialRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/TrialRepositoryTest.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.criteria.TrialCriteria; -import fr.inra.urgi.gpds.domain.data.TrialVO; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.criteria.TrialCriteria; +import fr.inra.urgi.faidare.domain.data.TrialVO; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.TestInstance; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepositoryTest.java similarity index 87% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepositoryTest.java index c5ba17d2670206f3012bdf5394289c7cb15f78fd..8d488134985ba82d9197472b2b0a349873dd0343 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/XRefDocumentRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/XRefDocumentRepositoryTest.java @@ -1,10 +1,10 @@ -package fr.inra.urgi.gpds.repository.es; +package fr.inra.urgi.faidare.repository.es; -import fr.inra.urgi.gpds.Application; -import fr.inra.urgi.gpds.domain.response.PaginatedList; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentSearchCriteria; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentVO; -import fr.inra.urgi.gpds.repository.es.setup.ESSetUp; +import fr.inra.urgi.faidare.Application; +import fr.inra.urgi.faidare.domain.response.PaginatedList; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentSearchCriteria; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentVO; +import fr.inra.urgi.faidare.repository.es.setup.ESSetUp; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.TestInstance; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/setup/ESSetUp.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/setup/ESSetUp.java similarity index 94% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/es/setup/ESSetUp.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/es/setup/ESSetUp.java index 7f38d301ba6ca9714d75f879d66d7a3668a3e5fd..d5f40e75b9e32918f37875946b6f993d790182d7 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/es/setup/ESSetUp.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/es/setup/ESSetUp.java @@ -1,12 +1,12 @@ -package fr.inra.urgi.gpds.repository.es.setup; +package fr.inra.urgi.faidare.repository.es.setup; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; import com.google.common.io.CharStreams; -import fr.inra.urgi.gpds.config.GPDSProperties; -import fr.inra.urgi.gpds.domain.xref.XRefDocumentVO; -import fr.inra.urgi.gpds.elasticsearch.document.DocumentAnnotationUtil; -import fr.inra.urgi.gpds.repository.es.XRefDocumentRepositoryImpl; +import fr.inra.urgi.faidare.config.FaidareProperties; +import fr.inra.urgi.faidare.domain.xref.XRefDocumentVO; +import fr.inra.urgi.faidare.elasticsearch.document.DocumentAnnotationUtil; +import fr.inra.urgi.faidare.repository.es.XRefDocumentRepositoryImpl; import org.elasticsearch.action.admin.indices.create.CreateIndexRequest; import org.elasticsearch.action.admin.indices.create.CreateIndexResponse; import org.elasticsearch.action.admin.indices.delete.DeleteIndexRequest; @@ -35,10 +35,10 @@ import java.util.Iterator; public class ESSetUp { private final RestHighLevelClient client; - private final GPDSProperties properties; + private final FaidareProperties properties; @Autowired - public ESSetUp(RestHighLevelClient client, GPDSProperties properties) { + public ESSetUp(RestHighLevelClient client, FaidareProperties properties) { this.client = client; this.properties = properties; } diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/http/UserGroupsResourceClientTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/http/UserGroupsResourceClientTest.java similarity index 89% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/http/UserGroupsResourceClientTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/http/UserGroupsResourceClientTest.java index 37fd07cd1070dfde579e5efd21d71ef456dde0b7..e557ebbeff9798ba938ebc7665c98c1573f9954d 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/http/UserGroupsResourceClientTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/http/UserGroupsResourceClientTest.java @@ -1,7 +1,7 @@ -package fr.inra.urgi.gpds.repository.http; +package fr.inra.urgi.faidare.repository.http; -import fr.inra.urgi.gpds.config.GPDSProperties; -import fr.inra.urgi.gpds.filter.AuthenticationStore; +import fr.inra.urgi.faidare.config.FaidareProperties; +import fr.inra.urgi.faidare.filter.AuthenticationStore; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.mockito.InjectMocks; @@ -20,7 +20,7 @@ import static org.mockito.Mockito.when; class UserGroupsResourceClientTest { @Mock - GPDSProperties properties; + FaidareProperties properties; @Mock RestTemplate restClient; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/repository/ontology/CropOntologyRepositoryTest.java b/backend/src/test/java/fr/inra/urgi/faidare/repository/ontology/CropOntologyRepositoryTest.java similarity index 94% rename from backend/src/test/java/fr/inra/urgi/gpds/repository/ontology/CropOntologyRepositoryTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/repository/ontology/CropOntologyRepositoryTest.java index d0e51fa92a520c4b9c5334b661756ae90ce27a29..d1bf30709551b515374feddb7942c3f9f93b4301 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/repository/ontology/CropOntologyRepositoryTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/repository/ontology/CropOntologyRepositoryTest.java @@ -1,11 +1,11 @@ -package fr.inra.urgi.gpds.repository.ontology; +package fr.inra.urgi.faidare.repository.ontology; import com.google.common.collect.Sets; -import fr.inra.urgi.gpds.config.GPDSProperties; -import fr.inra.urgi.gpds.domain.data.variable.ObservationVariableVO; -import fr.inra.urgi.gpds.domain.data.variable.OntologyVO; -import fr.inra.urgi.gpds.domain.data.variable.TraitVO; -import fr.inra.urgi.gpds.repository.file.CropOntologyRepositoryImpl; +import fr.inra.urgi.faidare.config.FaidareProperties; +import fr.inra.urgi.faidare.domain.data.variable.ObservationVariableVO; +import fr.inra.urgi.faidare.domain.data.variable.OntologyVO; +import fr.inra.urgi.faidare.domain.data.variable.TraitVO; +import fr.inra.urgi.faidare.repository.file.CropOntologyRepositoryImpl; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.mockito.InjectMocks; @@ -36,7 +36,7 @@ import static org.mockito.Mockito.when; class CropOntologyRepositoryTest { @Mock - GPDSProperties properties; + FaidareProperties properties; @Mock RestTemplate restClient; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/service/es/GermplasmServiceTest.java b/backend/src/test/java/fr/inra/urgi/faidare/service/es/GermplasmServiceTest.java similarity index 86% rename from backend/src/test/java/fr/inra/urgi/gpds/service/es/GermplasmServiceTest.java rename to backend/src/test/java/fr/inra/urgi/faidare/service/es/GermplasmServiceTest.java index aa446e840d0d6e7199b896210194e1c5bd133735..13e6e8e6385da0e074edeb1c3e6594c7ebb230e3 100644 --- a/backend/src/test/java/fr/inra/urgi/gpds/service/es/GermplasmServiceTest.java +++ b/backend/src/test/java/fr/inra/urgi/faidare/service/es/GermplasmServiceTest.java @@ -1,9 +1,9 @@ -package fr.inra.urgi.gpds.service.es; +package fr.inra.urgi.faidare.service.es; import com.opencsv.CSVReader; -import fr.inra.urgi.gpds.domain.criteria.GermplasmPOSTSearchCriteria; -import fr.inra.urgi.gpds.domain.data.germplasm.GermplasmVO; -import fr.inra.urgi.gpds.repository.es.GermplasmRepository; +import fr.inra.urgi.faidare.domain.criteria.GermplasmPOSTSearchCriteria; +import fr.inra.urgi.faidare.domain.data.germplasm.GermplasmVO; +import fr.inra.urgi.faidare.repository.es.GermplasmRepository; import org.assertj.core.util.Lists; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectBeanPropertyCriteria.java b/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectBeanPropertyCriteria.java deleted file mode 100644 index 4edcf565617c312dc895c164f242562f2c0f6395..0000000000000000000000000000000000000000 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectBeanPropertyCriteria.java +++ /dev/null @@ -1,16 +0,0 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.fixture; - -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.DocumentPath; - -/** - * @author gcornut - */ -@CriteriaForDocument(DocumentObject.class) -public class IncorrectBeanPropertyCriteria { - - // Missing getter & setter here: - @DocumentPath("field1") - String criteria1; - -} diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectEmptyCriteria.java b/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectEmptyCriteria.java deleted file mode 100644 index 2321a013f06a112df7876af26524c845c34cb686..0000000000000000000000000000000000000000 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/criteria/fixture/IncorrectEmptyCriteria.java +++ /dev/null @@ -1,15 +0,0 @@ -package fr.inra.urgi.gpds.elasticsearch.criteria.fixture; - -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.CriteriaForDocument; -import fr.inra.urgi.gpds.elasticsearch.criteria.annotation.NoDocumentMapping; - -/** - * @author gcornut - */ -@CriteriaForDocument(DocumentObject.class) -public class IncorrectEmptyCriteria { - - @NoDocumentMapping - String hiddenCriteria; - -} diff --git a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/SimpleDocument.java b/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/SimpleDocument.java deleted file mode 100644 index d4fc093f6c8e60e8a495cb9ce841b3d7cae6cfef..0000000000000000000000000000000000000000 --- a/backend/src/test/java/fr/inra/urgi/gpds/elasticsearch/document/fixture/SimpleDocument.java +++ /dev/null @@ -1,13 +0,0 @@ -package fr.inra.urgi.gpds.elasticsearch.document.fixture; - -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Document; -import fr.inra.urgi.gpds.elasticsearch.document.annotation.Id; - -/** - * @author gcornut - */ -@Document(type = "dataObject3") -public class SimpleDocument { - @Id - String id; -} diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query1.json b/backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query1.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query1.json rename to backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query1.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query2.json b/backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query2.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query2.json rename to backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query2.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query3.json b/backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query3.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query3.json rename to backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query3.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query4.json b/backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query4.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query4.json rename to backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query4.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query5.json b/backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query5.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query5.json rename to backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query5.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query6.json b/backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query6.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query6.json rename to backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query6.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query7.json b/backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query7.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/elasticsearch/query/impl/expected/query7.json rename to backend/src/test/resources/fr/inra/urgi/faidare/elasticsearch/query/impl/expected/query7.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/datadiscovery0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/datadiscovery0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/datadiscovery0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/datadiscovery0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/germplasm0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/germplasm0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/germplasm0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/germplasm0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/germplasmAttribute0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/germplasmAttribute0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/germplasmAttribute0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/germplasmAttribute0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/germplasmPedigree0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/germplasmPedigree0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/germplasmPedigree0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/germplasmPedigree0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/germplasmProgeny0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/germplasmProgeny0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/germplasmProgeny0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/germplasmProgeny0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/location0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/location0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/location0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/location0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/observationUnit0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/observationUnit0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/observationUnit0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/observationUnit0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/program0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/program0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/program0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/program0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/study0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/study0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/study0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/study0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/trial0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/trial0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/trial0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/trial0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/urgi_xref_test-group0.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/urgi_xref_test-group0.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/fixture/urgi_xref_test-group0.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/fixture/urgi_xref_test-group0.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/README.md b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/README.md similarity index 94% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/README.md rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/README.md index 7821ee85ffd9f57ee14140228046f291c398e36c..f5a7b39f92e8a605b49b094ffd5eefaf71c05893 100644 --- a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/README.md +++ b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/README.md @@ -1,4 +1,4 @@ -This directory contains document mappings and index settings for GPDS Elasticsearch documents. +This directory contains document mappings and index settings for FAIDARE Elasticsearch documents. This directory is a copy of the directory from the GnpIS `database` git repository with the path: `GnpIS/elasticsearch/template/gnpis`. @@ -9,4 +9,4 @@ In the `settings.json` file, a custom analyzer is defined to index completion su The `index_suggester` is composed of a custom tokenizer named `special_tokenizer` and which uses a RegExp pattern to list all characters used to split tokens. The split characters includes: spaces, comas, dashes (low and high), parentheses (open and close), brackets (open and close) and curly brackets (open and close). The `index_suggester` is also composed of filters including the standard filter, the lowercase filter, the ascii folding filter and a NGram filter (with minimum of 1 and maximum of 20 characters starting on the front of a token). -The `search_suggester` is the same as `index_suggester` but without the NGram filter. \ No newline at end of file +The `search_suggester` is the same as `index_suggester` but without the NGram filter. diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/datadiscovery_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/datadiscovery_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/datadiscovery_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/datadiscovery_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/germplasmAttribute_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/germplasmAttribute_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/germplasmAttribute_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/germplasmAttribute_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/germplasmPedigree_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/germplasmPedigree_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/germplasmPedigree_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/germplasmPedigree_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/germplasmProgeny_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/germplasmProgeny_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/germplasmProgeny_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/germplasmProgeny_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/germplasm_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/germplasm_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/germplasm_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/germplasm_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/location_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/location_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/location_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/location_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/observationUnit_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/observationUnit_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/observationUnit_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/observationUnit_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/program_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/program_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/program_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/program_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/settings.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/settings.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/settings.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/settings.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/study_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/study_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/study_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/study_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/transplant_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/transplant_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/transplant_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/transplant_mapping.json diff --git a/backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/trial_mapping.json b/backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/trial_mapping.json similarity index 100% rename from backend/src/test/resources/fr/inra/urgi/gpds/repository/es/setup/index/trial_mapping.json rename to backend/src/test/resources/fr/inra/urgi/faidare/repository/es/setup/index/trial_mapping.json diff --git a/backend/src/test/resources/test.properties b/backend/src/test/resources/test.properties index a093f5b00268166bd0b54a6c54407bf45575eb92..a82442ba931e528774043a0ed48bbb38de4efa70 100644 --- a/backend/src/test/resources/test.properties +++ b/backend/src/test/resources/test.properties @@ -1,5 +1,5 @@ spring.data.elasticsearch.host=localhost spring.data.elasticsearch.port=9200 -gpds.elasticsearch-alias-template=gnpis_{source}_{documentType}-group{groupId} -gpds.elasticsearch-xref-index-name=urgi_xref_test +faidare.elasticsearch-alias-template=gnpis_{source}_{documentType}-group{groupId} +faidare.elasticsearch-xref-index-name=urgi_xref_test diff --git a/frontend/angular.json b/frontend/angular.json index 76b5e5d48b2001587d029913b9dfb24a4e03f060..f0bf2b8d50f695756d667873572cccd19c49f8f3 100644 --- a/frontend/angular.json +++ b/frontend/angular.json @@ -7,7 +7,7 @@ "root": "", "sourceRoot": "src", "projectType": "application", - "prefix": "gpds", + "prefix": "faidare", "schematics": { "@schematics/angular:component": { "styleext": "scss" @@ -25,14 +25,14 @@ "assets": [ { "glob": "**/*", - "input": "src/assets/gpds", + "input": "src/assets/faidare", "output": "/assets" }, "src/assets" ], "stylePreprocessorOptions": { "includePaths": [ - "src/assets/gpds/" + "src/assets/faidare/" ] }, "styles": [ @@ -42,7 +42,7 @@ "node_modules/leaflet.markercluster/dist/MarkerCluster.Default.css" ], "scripts": [], - "baseHref": "/gpds-dev/", + "baseHref": "/faidare-dev/", "es5BrowserSupport": true }, "configurations": { @@ -71,7 +71,7 @@ ], "stylePreprocessorOptions": { "includePaths": [ - "src/assets/gpds/" + "src/assets/faidare/" ] }, "baseHref": "./" @@ -101,14 +101,14 @@ "assets": [ { "glob": "**/*", - "input": "src/assets/gpds", + "input": "src/assets/faidare", "output": "/assets" }, "src/assets" ], "stylePreprocessorOptions": { "includePaths": [ - "src/assets/gpds/" + "src/assets/faidare/" ] }, "styles": [ diff --git a/frontend/e2e/src/app.po.ts b/frontend/e2e/src/app.po.ts index 5c89a45eedf153a07e5a438a57fe6a622e7ef4fc..59024fc9cfc2c8e71b0169f4f9594bf4b59fea4a 100644 --- a/frontend/e2e/src/app.po.ts +++ b/frontend/e2e/src/app.po.ts @@ -6,10 +6,10 @@ export class AppPage { } getTitleText() { - return element(by.css('gpds-root p')).getText(); + return element(by.css('faidare-root p')).getText(); } getLabel(id) { - return element(by.css('gpds-root label[for=' + id + ']')).getText(); + return element(by.css('faidare-root label[for=' + id + ']')).getText(); } } diff --git a/frontend/proxy.conf.js b/frontend/proxy.conf.js index 28c5f743c2de6a6f73c6d96706374b7e49f90165..68d1cb39ba00c6fb09cec8e61616f97cd7c6b774 100644 --- a/frontend/proxy.conf.js +++ b/frontend/proxy.conf.js @@ -1,8 +1,8 @@ const PROXY_CONFIG = [ { context: [ - "/gpds-dev/brapi", - "/gpds-dev/gnpis", + "/faidare-dev/brapi", + "/faidare-dev/gnpis", ], target: "http://localhost:8380", secure: false diff --git a/frontend/src/app/app.component.html b/frontend/src/app/app.component.html index 1bdaa071a44e1fcc6bac0e097cdaccdbcd195b9d..6631a05f3fedee885595808de83c850fe874cb6f 100644 --- a/frontend/src/app/app.component.html +++ b/frontend/src/app/app.component.html @@ -1,9 +1,9 @@ -<gpds-navbar></gpds-navbar> +<faidare-navbar></faidare-navbar> <div class="alert alert-warning text-center mb-4" role="alert"> This is a <b>beta</b> application. Please <a href="mailto:urgi-contact@inra.fr" class="alert-link" style="text-decoration: underline">contact us</a> for any comments </div> <div class="container"> - <gpds-error></gpds-error> + <faidare-error></faidare-error> <router-outlet></router-outlet> </div> diff --git a/frontend/src/app/app.component.ts b/frontend/src/app/app.component.ts index 13ca22f31c3504e79539b0e36bf3f384205b67f4..222abac5daf61d27b04d52f1a7fecf0342de8acc 100644 --- a/frontend/src/app/app.component.ts +++ b/frontend/src/app/app.component.ts @@ -1,7 +1,7 @@ import { Component } from '@angular/core'; @Component({ - selector: 'gpds-root', + selector: 'faidare-root', templateUrl: './app.component.html', styleUrls: ['./app.component.scss'] }) diff --git a/frontend/src/app/card-row/card-row.component.spec.ts b/frontend/src/app/card-row/card-row.component.spec.ts index 2c78f8ff82e7f1a8e0a48c573121e47086688eef..faf6f2b82d72f968a93bfb473d9c6fdf002f0b1b 100644 --- a/frontend/src/app/card-row/card-row.component.spec.ts +++ b/frontend/src/app/card-row/card-row.component.spec.ts @@ -24,16 +24,16 @@ class CardRowComponentTester extends ComponentTester<CardRowComponent> { /** - * Test gpds-card-row with a provided `ng-template` + * Test faidare-card-row with a provided `ng-template` */ @Component({ - selector: 'gpds-test', + selector: 'faidare-test', template: ` - <gpds-card-row> + <faidare-card-row> <ng-template> <strong>Value HTML template</strong> </ng-template> - </gpds-card-row>` + </faidare-card-row>` }) class CardRowWithTemplateComponent { @ViewChild(CardRowComponent) component: CardRowComponent; diff --git a/frontend/src/app/card-row/card-row.component.ts b/frontend/src/app/card-row/card-row.component.ts index 51e69d8b05b7ce7736f0805cd28c735d9d02906e..639a4defdcec9f96b951043da42cfbb971d4b3c4 100644 --- a/frontend/src/app/card-row/card-row.component.ts +++ b/frontend/src/app/card-row/card-row.component.ts @@ -1,7 +1,7 @@ import { Component, ContentChild, Input, TemplateRef } from '@angular/core'; @Component({ - selector: 'gpds-card-row', + selector: 'faidare-card-row', templateUrl: './card-row.component.html', styleUrls: ['./card-row.component.scss'] }) diff --git a/frontend/src/app/card-section/card-section.component.spec.ts b/frontend/src/app/card-section/card-section.component.spec.ts index c756a49452350b7ffddcb86486178dd9881b7eb0..72933da510e874fec9e78f83434c3b8a16080e76 100644 --- a/frontend/src/app/card-section/card-section.component.spec.ts +++ b/frontend/src/app/card-section/card-section.component.spec.ts @@ -6,16 +6,16 @@ import { Component, ViewChild } from '@angular/core'; /** - * Test gpds-card-section with a provided `ng-template` + * Test faidare-card-section with a provided `ng-template` */ @Component({ - selector: 'gpds-test', + selector: 'faidare-test', template: ` - <gpds-card-section> + <faidare-card-section> <ng-template> <div class="test-body">Body HTML template</div> </ng-template> - </gpds-card-section>` + </faidare-card-section>` }) class CardSectionTestWrapperComponent { @ViewChild(CardSectionComponent) component: CardSectionComponent; diff --git a/frontend/src/app/card-section/card-section.component.ts b/frontend/src/app/card-section/card-section.component.ts index bd014e2e38fe4019d4284108b0428b299ef47c24..b4388cd83467b1d892f6ddc4ebf235cf3f1d52d8 100644 --- a/frontend/src/app/card-section/card-section.component.ts +++ b/frontend/src/app/card-section/card-section.component.ts @@ -1,7 +1,7 @@ import { Component, ContentChild, Input, TemplateRef } from '@angular/core'; @Component({ - selector: 'gpds-card-section', + selector: 'faidare-card-section', templateUrl: './card-section.component.html', styleUrls: ['./card-section.component.scss'] }) diff --git a/frontend/src/app/card-table/card-table.component.spec.ts b/frontend/src/app/card-table/card-table.component.spec.ts index da131453876bf0ceefdaafbf9bd6d1b854bdb290..74671515ea31da18d333c2423ea91aa59aaee9ac 100644 --- a/frontend/src/app/card-table/card-table.component.spec.ts +++ b/frontend/src/app/card-table/card-table.component.spec.ts @@ -4,12 +4,12 @@ import { CardTableComponent } from './card-table.component'; import { Component, ViewChild } from '@angular/core'; /** - * Test gpds-card-table with a simple provided row `ng-template` + * Test faidare-card-table with a simple provided row `ng-template` */ @Component({ - selector: 'gpds-test', + selector: 'faidare-test', template: ` - <gpds-card-table> + <faidare-card-table> <ng-template let-row> <tr> <td>{{ row[0] }}</td> @@ -17,7 +17,7 @@ import { Component, ViewChild } from '@angular/core'; <td>{{ row[2] }}</td> </tr> </ng-template> - </gpds-card-table>` + </faidare-card-table>` }) class CardTableTestWrapperComponent { @ViewChild(CardTableComponent) component: CardTableComponent; diff --git a/frontend/src/app/card-table/card-table.component.ts b/frontend/src/app/card-table/card-table.component.ts index dd871e030080e7ff6679341f87f95ac4ec1254d6..7d079c135256a83c9c5f77017d1683b2444ea0cd 100644 --- a/frontend/src/app/card-table/card-table.component.ts +++ b/frontend/src/app/card-table/card-table.component.ts @@ -1,7 +1,7 @@ import { Component, ContentChild, Input, TemplateRef } from '@angular/core'; @Component({ - selector: 'gpds-card-table', + selector: 'faidare-card-table', templateUrl: './card-table.component.html', styleUrls: ['./card-table.component.scss'] }) diff --git a/frontend/src/app/error/error.component.ts b/frontend/src/app/error/error.component.ts index c93c9790e02762bd58d706288c60db615729f448..66e6e4bdce437a5b034c80a5c5572d151883d0f1 100644 --- a/frontend/src/app/error/error.component.ts +++ b/frontend/src/app/error/error.component.ts @@ -6,7 +6,7 @@ import { filter, map } from 'rxjs/operators'; import { Location } from '@angular/common'; @Component({ - selector: 'gpds-error', + selector: 'faidare-error', templateUrl: './error.component.html', styleUrls: ['./error.component.scss'] }) diff --git a/frontend/src/app/form/form.component.html b/frontend/src/app/form/form.component.html index 8afaa32eb25f3fd1322ecc6651f584edebdcc2c6..d699f8bc0279d3ade9b98a2113baaed42e7a4450 100644 --- a/frontend/src/app/form/form.component.html +++ b/frontend/src/app/form/form.component.html @@ -26,12 +26,12 @@ </small> </label> <div class="col-sm-8"> - <gpds-suggestion-field + <faidare-suggestion-field inputId="crops" criteriaField="crops" [criteria$]="criteria$" placeholder="Search crops"> - </gpds-suggestion-field> + </faidare-suggestion-field> </div> </div> <!-- Input for the germplasmList field --> @@ -43,12 +43,12 @@ </small> </label> <div class="col-sm-8"> - <gpds-suggestion-field + <faidare-suggestion-field inputId="germplasmList" criteriaField="germplasmLists" [criteria$]="criteria$" placeholder="Search germplasm lists"> - </gpds-suggestion-field> + </faidare-suggestion-field> </div> </div> <!-- Input for the accessions field --> @@ -60,20 +60,20 @@ </small> </label> <div class="col-sm-8"> - <gpds-suggestion-field + <faidare-suggestion-field inputId="accessions" criteriaField="accessions" [criteria$]="criteria$" placeholder="Search germplasm accession"> - </gpds-suggestion-field> + </faidare-suggestion-field> </div> </div> </div> <!-- Trait tab --> <div class="trait {{ getTabClass(tabs.TRAIT) }}"> - <gpds-trait-ontology-widget + <faidare-trait-ontology-widget [criteria$]="criteria$" (initialized)="traitWidgetInitialized.emit($event)"> - </gpds-trait-ontology-widget> + </faidare-trait-ontology-widget> </div> diff --git a/frontend/src/app/form/form.component.spec.ts b/frontend/src/app/form/form.component.spec.ts index 64edc68383f9f1a955177b69a8db00d9962d41f5..c9f0ab8721ccec7b7ede8c16e74c7fc4887fa5d3 100644 --- a/frontend/src/app/form/form.component.spec.ts +++ b/frontend/src/app/form/form.component.spec.ts @@ -4,10 +4,10 @@ import { FormComponent } from './form.component'; import { Component, EventEmitter, Input, Output } from '@angular/core'; /** - * Mock gpds-suggestion-field + * Mock faidare-suggestion-field */ @Component({ - selector: 'gpds-suggestion-field', + selector: 'faidare-suggestion-field', template: '<br/>' }) class MockSuggestionFieldComponent { @@ -15,10 +15,10 @@ class MockSuggestionFieldComponent { } /** - * Mock gpds-trait-ontology-widget + * Mock faidare-trait-ontology-widget */ @Component({ - selector: 'gpds-trait-ontology-widget', + selector: 'faidare-trait-ontology-widget', template: '<br/>' }) class MockTraitWidgetComponent { diff --git a/frontend/src/app/form/form.component.ts b/frontend/src/app/form/form.component.ts index c2d37198bea1f6cf5bf70dc923555cd94be995f2..fe09236ad2c431ba72886a527eb471f1a99cb02f 100644 --- a/frontend/src/app/form/form.component.ts +++ b/frontend/src/app/form/form.component.ts @@ -8,7 +8,7 @@ enum Tabs { } @Component({ - selector: 'gpds-form', + selector: 'faidare-form', templateUrl: './form.component.html', styleUrls: ['./form.component.scss'] }) diff --git a/frontend/src/app/form/suggestion-field/suggestion-field.component.ts b/frontend/src/app/form/suggestion-field/suggestion-field.component.ts index 6505693e38a78cecfddab250afd61ecc709bfbb5..bbac52ab39b25cac5ee8dd7c59afcc839606187b 100644 --- a/frontend/src/app/form/suggestion-field/suggestion-field.component.ts +++ b/frontend/src/app/form/suggestion-field/suggestion-field.component.ts @@ -7,7 +7,7 @@ import { debounceTime, filter, map, switchMap } from 'rxjs/operators'; import { DataDiscoveryCriteria } from '../../models/data-discovery.model'; @Component({ - selector: 'gpds-suggestion-field', + selector: 'faidare-suggestion-field', templateUrl: './suggestion-field.component.html', styleUrls: ['./suggestion-field.component.scss'] }) diff --git a/frontend/src/app/form/trait-ontology-widget/trait-ontology-widget.component.ts b/frontend/src/app/form/trait-ontology-widget/trait-ontology-widget.component.ts index b27eece17dd62178d011f70235a9f32b96c264b0..5960e5ef30205b48e3c7be5a6e638abcf5df4b7c 100644 --- a/frontend/src/app/form/trait-ontology-widget/trait-ontology-widget.component.ts +++ b/frontend/src/app/form/trait-ontology-widget/trait-ontology-widget.component.ts @@ -17,7 +17,7 @@ export class CropOntologyWidgetFactory { } @Component({ - selector: 'gpds-trait-ontology-widget', + selector: 'faidare-trait-ontology-widget', templateUrl: './trait-ontology-widget.component.html', styleUrls: ['./trait-ontology-widget.component.scss'], diff --git a/frontend/src/app/germplasm-card/germplasm-card.component.html b/frontend/src/app/germplasm-card/germplasm-card.component.html index 45d8adb7825386544951ae4cbd2997dfa7120d7d..a7d4ccd84829671bcb3454d40c7d68fafe29a8d2 100644 --- a/frontend/src/app/germplasm-card/germplasm-card.component.html +++ b/frontend/src/app/germplasm-card/germplasm-card.component.html @@ -1,4 +1,4 @@ -<gpds-loading-spinner [loading]="loading" class="float-right"></gpds-loading-spinner> +<faidare-loading-spinner [loading]="loading" class="float-right"></faidare-loading-spinner> <ng-container *ngIf="germplasmGnpis"> <h3 class="mb-4"> @@ -9,54 +9,54 @@ </h3> <!-- Display the map --> - <gpds-map [locations]="germplasmLocations"></gpds-map> + <faidare-map [locations]="germplasmLocations"></faidare-map> <div class="row align-items-center"> <!--Templates for gerplasm card--> <ng-template #taxonTemplate> - <gpds-card-row + <faidare-card-row label="Genus" [test]="germplasmGnpis.genus"> <ng-template> <i>{{ germplasmGnpis.genus }}</i> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Species" [test]="germplasmGnpis.species"> <ng-template> <i>{{ germplasmGnpis.species }}</i> {{ germplasmGnpis.speciesAuthority ? '(' + germplasmGnpis.speciesAuthority + ')' : '' }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Subtaxa" [test]="germplasmGnpis.subtaxa"> <ng-template> <i>{{ germplasmGnpis.subtaxa }}</i> {{ germplasmGnpis.subtaxaAuthority ? '(' + germplasmGnpis.subtaxaAuthority + ')' : '' }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Authority" [test]="germplasmTaxonAuthor"> <ng-template> {{ germplasmTaxonAuthor }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Taxon ID" [test]="taxonIdsWithURL && taxonIdsWithURL.length > 0"> <ng-template> <ng-container *ngFor="let taxonRef of taxonIdsWithURL"> - <gpds-card-row + <faidare-card-row [label]="taxonRef.sourceName" [test]="taxonRef.url"> <ng-template> @@ -64,29 +64,29 @@ {{ taxonRef.taxonId }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row [label]="taxonRef.sourceName" [test]="!taxonRef.url"> <ng-template> {{ taxonRef.taxonId }} </ng-template> - </gpds-card-row> + </faidare-card-row> </ng-container> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Comment" [test]="germplasmGnpis.taxonComment"> <ng-template> {{ germplasmGnpis.taxonComment }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Taxon common names" [test]="germplasmGnpis.taxonCommonNames && germplasmGnpis.taxonCommonNames.length > 0"> <ng-template> @@ -94,9 +94,9 @@ {{ germplasmGnpis.taxonCommonNames.join(', ') }} </div> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Taxon synonyms" [test]="germplasmGnpis.taxonSynonyms && germplasmGnpis.taxonSynonyms.length > 0"> <ng-template> @@ -104,45 +104,45 @@ <i>{{ germplasmGnpis.taxonSynonyms.join(', ') }}</i> </div> </ng-template> - </gpds-card-row> + </faidare-card-row> </ng-template> <ng-template #instituteTemplate let-logo="logo" let-code="instituteCode" let-acronym="acronym" let-organisation="organisation" let-type="instituteType" let-webSite="webSite" let-address="address"> - <gpds-card-row + <faidare-card-row label="" [test]="logo"> <ng-template> <img [src]="logo"/> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Code" [value]="code"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Acronym" [value]="acronym"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Organisation" [value]="organisation"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Type" [value]="type"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Address" [value]="address"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Website" [test]="webSite"> <ng-template> @@ -150,7 +150,7 @@ {{ webSite }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> </ng-template> <ng-template #holdingInstituteTemplate> @@ -189,53 +189,53 @@ alt="" width="250px"> <div class="card-body"> - <gpds-card-row + <faidare-card-row label="Accession name" [value]="germplasmGnpis.germplasmName"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Photo name" [value]="germplasmGnpis.photo.photoName"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Description" [value]="germplasmGnpis.photo.description"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Copyright" [value]="'© '+germplasmGnpis.photo.copyright"> - </gpds-card-row> + </faidare-card-row> </div> </div> </ng-template> </div> <!--Section for the information about the identification of the germplasm--> - <gpds-card-section + <faidare-card-section class="col-12 col-lg" header="Identification"> <ng-template> <div class="card-body card-section-body"> - <gpds-card-row + <faidare-card-row label="Germplasm name" [value]="germplasmGnpis.germplasmName"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Accession number" [value]="germplasmGnpis.accessionNumber"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Permanent Unique Identifier" [value]="germplasmGnpis.germplasmPUI"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Source" [test]="germplasmSource"> <ng-template> @@ -244,9 +244,9 @@ <img [src]="germplasmSource['schema:image']" alt="Germplasm source image"/> </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Data source" [test]="germplasmSource['schema:identifier'] && germplasmGnpis.documentationURL"> <ng-template> @@ -254,9 +254,9 @@ Link to this study on {{ germplasmSource['schema:identifier'] }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Accession synonyms" [test]="germplasmGnpis.synonyms && germplasmGnpis.synonyms.length > 0"> <ng-template> @@ -264,9 +264,9 @@ {{ germplasmGnpis.synonyms.join(', ') }} </div> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Taxon" [test]="germplasmTaxon"> <ng-template> @@ -279,34 +279,34 @@ {{ germplasmTaxonAuthor ? '(' + germplasmTaxonAuthor + ')' : '' }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Biological status" [value]="germplasmGnpis.biologicalStatusOfAccessionCode"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Genetic nature" [value]="germplasmGnpis.geneticNature"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Seed source" [value]="germplasmGnpis.seedSource"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Pedigree" [value]="germplasmGnpis.pedigree"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Comments" [value]="germplasmGnpis.comment"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Origin site" [test]="germplasmGnpis.originSite && germplasmGnpis.originSite.siteName"> <ng-template> @@ -314,21 +314,21 @@ {{ germplasmGnpis.originSite.siteName }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> </div> <!--Section for the information about the holding of the germplasm--> - <gpds-card-section + <faidare-card-section header="Holding" [test]="germplasmGnpis.holdingInstitute"> <ng-template> <div class="card-body card-section-body"> - <gpds-card-row + <faidare-card-row label="Institution"> <ng-template> <a class="popover-underline" data-boundary="window" placement="auto" @@ -338,9 +338,9 @@ container="body"> {{ germplasmGnpis.holdingInstitute.instituteName }}</a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Stock center name" [test]="germplasmGnpis.holdingGenbank.instituteName && germplasmGnpis.holdingGenbank.webSite"> <ng-template> @@ -348,33 +348,33 @@ {{ germplasmGnpis.holdingGenbank.instituteName }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Stock center name" [test]="germplasmGnpis.holdingGenbank.instituteName && !germplasmGnpis.holdingGenbank.webSite"> <ng-template> {{ germplasmGnpis.holdingGenbank.instituteName }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Presence status" [value]="germplasmGnpis.presenceStatus"> - </gpds-card-row> + </faidare-card-row> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--Section for the information about the collector of the germplasm--> - <gpds-card-section + <faidare-card-section header="Collecting" [test]="checkCollecting()"> <ng-template> <div class="card-body card-section-body"> - <gpds-card-row + <faidare-card-row label="Collecting site" [test]="germplasmGnpis.collectingSite && germplasmGnpis.collectingSite.siteName"> <ng-template> @@ -382,41 +382,41 @@ {{ germplasmGnpis.collectingSite.siteName }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Material type" [test]="germplasmGnpis.collector && germplasmGnpis.collector.materialType"> <ng-template> {{ germplasmGnpis.collector.materialType }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Collectors" [test]="germplasmGnpis.collector && germplasmGnpis.collector.collectors"> <ng-template> {{ germplasmGnpis.collector.collectors }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Acquisition/Creation date" [test]="germplasmGnpis.collector.accessionCreationDate"> <ng-template> {{ germplasmGnpis.collector.accessionCreationDate | amParse:'YYYYMMDD' | amDateFormat:'YYYY-MM-DD' }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Acquisition/Creation date" [test]="germplasmGnpis.acquisitionDate && !germplasmGnpis.collector.accessionCreationDate"> <ng-template> {{ germplasmGnpis.acquisitionDate }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Institution" [test]="germplasmGnpis.collector.institute && germplasmGnpis.collector.institute.instituteName"> <ng-template> @@ -427,28 +427,28 @@ {{ germplasmGnpis.collector.institute.instituteName }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Accession number" [test]="germplasmGnpis.collector && germplasmGnpis.collector.accessionNumber"> <ng-template> {{ germplasmGnpis.collector.accessionNumber }} </ng-template> - </gpds-card-row> + </faidare-card-row> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--Section for the information about the breeder of the germplasm--> - <gpds-card-section + <faidare-card-section header="Breeder" [test]="checkBreeder()"> <ng-template> <div class="card-body card-section-body"> - <gpds-card-row + <faidare-card-row label="Institute" [test]="germplasmGnpis.breeder.institute && germplasmGnpis.breeder.institute.instituteName"> <ng-template> @@ -459,39 +459,39 @@ {{ germplasmGnpis.breeder.institute.instituteName }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Accession creation year" [value]="germplasmGnpis.breeder.accessionCreationDate "> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Accession number" [value]="germplasmGnpis.breeder.accessionNumber"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Catalog registration year" [value]="germplasmGnpis.breeder.registrationYear"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Catalog deregistration year" [value]="germplasmGnpis.breeder.deregistrationYear"> - </gpds-card-row> + </faidare-card-row> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--Section for the information about the donor of the germplasm--> - <gpds-card-section + <faidare-card-section header="Donor" [test]="germplasmGnpis.donors && germplasmGnpis.donors.length > 0"> <ng-template> - <gpds-card-table + <faidare-card-table [headers]="[ 'Institute name', 'Institute code', @@ -521,19 +521,19 @@ <td>{{ row.donorGermplasmPUI }}</td> </tr> </ng-template> - </gpds-card-table> + </faidare-card-table> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--Section for the information about the distributor of the germplasm--> - <gpds-card-section + <faidare-card-section header="Distributor" [test]="germplasmGnpis.distributors && germplasmGnpis.distributors.length>0"> <ng-template> <!--TODO : Add order column when ordering URL will be available--> - <gpds-card-table + <faidare-card-table [headers]="[ 'Institute', 'Accession number', @@ -559,66 +559,66 @@ <td>{{ row.distributionStatus }}</td> </tr> </ng-template> - </gpds-card-table> + </faidare-card-table> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--Section for the information about the primary descriptors of the germplasm--> - <gpds-card-section + <faidare-card-section header="Evaluation Data" [test]="germplasmAttributes && germplasmAttributes.length > 0"> <ng-template> <div class="card-body card-section-body"> <ng-container *ngFor="let descriptor of germplasmAttributes"> - <gpds-card-row + <faidare-card-row [label]="descriptor.attributeName" [value]="descriptor.value"> - </gpds-card-row> + </faidare-card-row> </ng-container> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--Section for the information about the genealoggy of the germplasm--> - <gpds-card-section + <faidare-card-section header="Genealogy" [test]="checkPedigree() || checkProgeny()"> <ng-template> <div class="card-body card-section-body"> - <gpds-card-row + <faidare-card-row label="Crossing plan" [test]="germplasmPedigree && germplasmPedigree.crossingPlan"> <ng-template> {{ germplasmPedigree.crossingPlan }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Crossing year" [test]="germplasmPedigree && germplasmPedigree.crossingYear"> <ng-template> {{ germplasmPedigree.crossingYear }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Family code" [test]="germplasmPedigree && germplasmPedigree.familyCode"> <ng-template> {{ germplasmPedigree.familyCode }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Parent accessions" [test]="germplasmPedigree && germplasmPedigree.parent1Name"> <ng-template> - <gpds-card-row + <faidare-card-row [label]="germplasmPedigree.parent1Type" [test]="germplasmPedigree && germplasmPedigree.parent1DbId"> <ng-template> @@ -627,9 +627,9 @@ {{ germplasmPedigree.parent1Name }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row [label]="germplasmPedigree.parent2Type" [test]="germplasmPedigree && germplasmPedigree.parent2DbId"> <ng-template> @@ -638,12 +638,12 @@ {{ germplasmPedigree.parent2Name }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Sibling accession" [test]="germplasmPedigree && (germplasmPedigree.siblings && germplasmPedigree.siblings.length > 0)"> <ng-template> @@ -657,17 +657,17 @@ </div> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Descendant" [test]="checkProgeny()"> - </gpds-card-row> + </faidare-card-row> <div class="content-overflow-big"> <ng-container *ngFor="let child of germplasmProgeny"> - <gpds-card-row class="text" + <faidare-card-row class="text" [label]="child.secondParentName ? 'child(ren) of ' + child.firstParentName + ' x ' + child.secondParentName : 'child(ren) of ' + child.firstParentName" [test]="checkProgeny()"> <ng-template> @@ -679,23 +679,23 @@ </ng-container> </ng-template> - </gpds-card-row> + </faidare-card-row> </ng-container> </div> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--Section for the information about the population, collection and panel of the germplasm--> - <gpds-card-section + <faidare-card-section header="Population" [test]="germplasmGnpis.population && germplasmGnpis.population.length > 0"> <ng-template> <div class="card-body card-section-body card-section-body"> <ng-container *ngFor="let population of germplasmGnpis.population"> - <gpds-card-row + <faidare-card-row [label]="population.type ? population.name + ' (' + population.type + ')' : population.name" [test]="population.germplasmRef && population.germplasmRef.pui && population.germplasmRef.pui != germplasmGnpis.germplasmDbId"> <ng-template> @@ -708,9 +708,9 @@ {{ population.germplasmCount }} accessions </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row [label]="population.type ? population.name + ' (' + population.type + ')' : population.name" [test]="population.germplasmRef && population.germplasmRef.pui && population.germplasmRef.pui == germplasmGnpis.germplasmDbId"> <ng-template> @@ -720,9 +720,9 @@ {{ population.germplasmCount }} accessions </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row [label]="population.type ? population.name + ' (' + population.type + ')' : population.name" [test]="population.germplasmRef && !population.germplasmRef.pui"> <ng-template> @@ -731,21 +731,21 @@ {{ population.germplasmCount }} accessions </a> </ng-template> - </gpds-card-row> + </faidare-card-row> </ng-container> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> - <gpds-card-section + <faidare-card-section header="Collection" [test]="germplasmGnpis.collection && germplasmGnpis.collection.length > 0"> <ng-template> <div class="card-body card-section-body"> <ng-container *ngFor="let collection of germplasmGnpis.collection"> - <gpds-card-row + <faidare-card-row [label]="collection.type ? collection.name + ' (' + collection.type + ')' : collection.name"> <ng-template> <a [routerLink]="['/']" @@ -753,21 +753,21 @@ {{ collection.germplasmCount }} accessions </a> </ng-template> - </gpds-card-row> + </faidare-card-row> </ng-container> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> - <gpds-card-section + <faidare-card-section header="Panel" [test]="germplasmGnpis.panel && germplasmGnpis.panel.length > 0"> <ng-template> <div class="card-body card-section-body"> <ng-container *ngFor="let panel of germplasmGnpis.panel"> - <gpds-card-row + <faidare-card-row [label]="panel.type ? panel.name + ' (' + panel.type + ')' : panel.name"> <ng-template> <a [routerLink]="['/']" @@ -775,14 +775,14 @@ {{ panel.germplasmCount }} accessions </a> </ng-template> - </gpds-card-row> + </faidare-card-row> </ng-container> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> <!-- XRefs part --> - <gpds-xrefs [xrefId]="germplasmGnpis.germplasmPUI"></gpds-xrefs> + <faidare-xrefs [xrefId]="germplasmGnpis.germplasmPUI"></faidare-xrefs> </ng-container> diff --git a/frontend/src/app/germplasm-card/germplasm-card.component.ts b/frontend/src/app/germplasm-card/germplasm-card.component.ts index b1aaf9f658b29aae12832fdd3e0f33c57ceca47d..e02c0cdf59eec625a88f4fa33bb5ad10a82622df 100644 --- a/frontend/src/app/germplasm-card/germplasm-card.component.ts +++ b/frontend/src/app/germplasm-card/germplasm-card.component.ts @@ -7,7 +7,7 @@ import { Children, Germplasm, Site } from '../models/gnpis.model'; import { DataDiscoverySource } from '../models/data-discovery.model'; @Component({ - selector: 'gpds-germplasm-card', + selector: 'faidare-germplasm-card', templateUrl: './germplasm-card.component.html', styleUrls: ['./germplasm-card.component.scss'] }) diff --git a/frontend/src/app/loading-spinner/loading-spinner.component.ts b/frontend/src/app/loading-spinner/loading-spinner.component.ts index b0c1cef49007451936613248e9f5f419f35e8b9a..c6852e4edfbea468f38cf64633acdb7a3481025f 100644 --- a/frontend/src/app/loading-spinner/loading-spinner.component.ts +++ b/frontend/src/app/loading-spinner/loading-spinner.component.ts @@ -2,7 +2,7 @@ import { Component, Input, OnInit } from '@angular/core'; import { ErrorInterceptorService } from '../error-interceptor.service'; @Component({ - selector: 'gpds-loading-spinner', + selector: 'faidare-loading-spinner', template: ` <div *ngIf="loading" class="loading"> <i class="fa fa-spin fa-spinner" title="Loading..."></i> diff --git a/frontend/src/app/map/map.component.html b/frontend/src/app/map/map.component.html index 9285cb1a709ff23a3253d2e6357d8678d3ea0215..ea33a10ff63831a86e76a3de4f17c02f4fa5ec26 100644 --- a/frontend/src/app/map/map.component.html +++ b/frontend/src/app/map/map.component.html @@ -1,12 +1,12 @@ <div id="map" class="rounded"> </div> <div *ngIf="curatedLocationList.length > 0" id="maplegend"> - <img src="assets/gpds/images/marker-icon-red.png" id="red"/> + <img src="assets/faidare/images/marker-icon-red.png" id="red"/> <label for="red">Origin site</label> - <img src="assets/gpds/images/marker-icon-blue.png" id="blue"/> + <img src="assets/faidare/images/marker-icon-blue.png" id="blue"/> <label for="blue">Collecting site</label> - <img src="assets/gpds/images/marker-icon-green.png" id="green"/> + <img src="assets/faidare/images/marker-icon-green.png" id="green"/> <label for="green">Evaluation site</label> - <img src="assets/gpds/images/marker-icon-purple.png" id="purple"/> + <img src="assets/faidare/images/marker-icon-purple.png" id="purple"/> <label for="purple">Multi-purpose site</label> </div> diff --git a/frontend/src/app/map/map.component.ts b/frontend/src/app/map/map.component.ts index bc566b84667bf0f2cf3e74d1ce99e832df0877e4..90ee33acfec4d95c26553e9bde5a6e0bf5962eec 100644 --- a/frontend/src/app/map/map.component.ts +++ b/frontend/src/app/map/map.component.ts @@ -4,7 +4,7 @@ import { MarkerClusterGroup } from 'leaflet.markercluster/src'; import { BrapiLocation } from '../models/brapi.model'; @Component({ - selector: 'gpds-map', + selector: 'faidare-map', templateUrl: './map.component.html', styleUrls: ['./map.component.scss'] }) @@ -60,15 +60,15 @@ export class MapComponent implements OnInit { getMarkerIconUrl(site: BrapiLocation): string { if (site.locationType === 'Origin site') { - return 'assets/gpds/images/marker-icon-red.png'; + return 'assets/faidare/images/marker-icon-red.png'; } if (site.locationType === 'Collecting site') { - return 'assets/gpds/images/marker-icon-blue.png'; + return 'assets/faidare/images/marker-icon-blue.png'; } if (site.locationType === 'Evaluation site') { - return 'assets/gpds/images/marker-icon-green.png'; + return 'assets/faidare/images/marker-icon-green.png'; } - return 'assets/gpds/images/marker-icon-purple.png'; + return 'assets/faidare/images/marker-icon-purple.png'; } removeEmptyLocations(locations: BrapiLocation[]) { diff --git a/frontend/src/app/navbar/navbar.component.ts b/frontend/src/app/navbar/navbar.component.ts index 0b8336a0749ae78381edb53284b529eb7d45f033..78d66a1c190eeed9e90bfa8b24203fa2df10ec5e 100644 --- a/frontend/src/app/navbar/navbar.component.ts +++ b/frontend/src/app/navbar/navbar.component.ts @@ -2,7 +2,7 @@ import { Component } from '@angular/core'; import { environment } from '../../environments/environment'; @Component({ - selector: 'gpds-navbar', + selector: 'faidare-navbar', templateUrl: './navbar.component.html', styleUrls: ['./navbar.component.scss'] }) diff --git a/frontend/src/app/result-page/document/document.component.ts b/frontend/src/app/result-page/document/document.component.ts index 7d5f6b0e6974090ae6816d0567c611966d35b217..9a9281e3e5c64c042c624a0a3da1d272417e7fef 100644 --- a/frontend/src/app/result-page/document/document.component.ts +++ b/frontend/src/app/result-page/document/document.component.ts @@ -2,7 +2,7 @@ import { Component, Input, OnInit } from '@angular/core'; import { DataDiscoveryDocument, DataDiscoveryType } from '../../models/data-discovery.model'; @Component({ - selector: 'gpds-document', + selector: 'faidare-document', templateUrl: './document.component.html', styleUrls: ['./document.component.scss'] }) diff --git a/frontend/src/app/result-page/facets/facets.component.ts b/frontend/src/app/result-page/facets/facets.component.ts index 4aa06655470ddb67e8ad5d3f3fe4cdcc022880dc..d78745ed208c44e7324567907ca11f863d8cacc9 100644 --- a/frontend/src/app/result-page/facets/facets.component.ts +++ b/frontend/src/app/result-page/facets/facets.component.ts @@ -5,7 +5,7 @@ import { BehaviorSubject } from 'rxjs'; import { filter } from 'rxjs/operators'; @Component({ - selector: 'gpds-facets', + selector: 'faidare-facets', templateUrl: './facets.component.html', styleUrls: ['./facets.component.scss'] }) diff --git a/frontend/src/app/result-page/result-page.component.html b/frontend/src/app/result-page/result-page.component.html index b8bd5aad73bb7139335dcfd0e407aa1ddc2e9a01..f13586e7f3332d7be2ae1920c267e29ad7e11b95 100644 --- a/frontend/src/app/result-page/result-page.component.html +++ b/frontend/src/app/result-page/result-page.component.html @@ -10,21 +10,21 @@ </div> <!-- Form --> - <gpds-form + <faidare-form #form [criteria$]="criteria$"> - </gpds-form> + </faidare-form> </div> <!-- Column for facets --> <div class="col-lg-3 order-lg-first"> <div class="row"> - <gpds-facets + <faidare-facets class="col-12 col-lg-12 col-sm-6" *ngFor="let facet of facets" [criteria$]="criteria$" [facet]="facet"> - </gpds-facets> + </faidare-facets> </div> </div> @@ -33,7 +33,7 @@ <div class="col-lg-9"> <!-- Loading spinner--> <div class="text-center"> - <gpds-loading-spinner [loading]="loading"></gpds-loading-spinner> + <faidare-loading-spinner [loading]="loading"></faidare-loading-spinner> </div> <!-- No criteria selected --> @@ -74,10 +74,10 @@ </div> <!-- Result document --> - <gpds-document + <faidare-document *ngFor="let document of documents" [document]="document"> - </gpds-document> + </faidare-document> <!-- Pagination --> <!--Bottom page navigator--> diff --git a/frontend/src/app/result-page/result-page.component.ts b/frontend/src/app/result-page/result-page.component.ts index f8422b8fa546e85d850887fe44902fef7a706fdb..9a200f719d7d33ce3e80d3a0059623f02159a4f5 100644 --- a/frontend/src/app/result-page/result-page.component.ts +++ b/frontend/src/app/result-page/result-page.component.ts @@ -15,7 +15,7 @@ import { FormComponent } from '../form/form.component'; @Component({ - selector: 'gpds-result', + selector: 'faidare-result', templateUrl: './result-page.component.html', styleUrls: ['./result-page.component.scss'], }) diff --git a/frontend/src/app/site-card/site-card.component.html b/frontend/src/app/site-card/site-card.component.html index ba9d335ec0745debd040e32df55016c3e8dfdde8..f2882f3f5bca340a3388ebce3647d68c1e3b8d12 100644 --- a/frontend/src/app/site-card/site-card.component.html +++ b/frontend/src/app/site-card/site-card.component.html @@ -1,4 +1,4 @@ -<gpds-loading-spinner [loading]="loading" class="float-right"></gpds-loading-spinner> +<faidare-loading-spinner [loading]="loading" class="float-right"></faidare-loading-spinner> <ng-container *ngIf="location"> <h3> @@ -7,16 +7,16 @@ </h3> - <gpds-map [locations]="[location]"></gpds-map> + <faidare-map [locations]="[location]"></faidare-map> - <gpds-card-section + <faidare-card-section header="Details"> <ng-template> <div class="card-body card-section-body"> - <gpds-card-row + <faidare-card-row label="Source" [test]="location"> <ng-template> @@ -25,9 +25,9 @@ <img [src]="locationSource['schema:image']" alt="Location source image"/> </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Data source" [test]="location && location['schema:identifier'] && location.documentationURL"> <ng-template> @@ -35,158 +35,158 @@ Link to this study on {{ location['schema:identifier'] }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Abbreviation" [value]="location.abbreviation"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Type" [value]="location.locationType"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Status" [test]="location.additionalInfo['Site status']"> <ng-template> {{ location.additionalInfo['Site status'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Institution/Landowner" [value]="location.institutionName"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Institution address" [value]="location.institutionAddress"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Coordinates precision" [test]="location.additionalInfo['Coordinates precision']"> <ng-template> {{ location.additionalInfo['Coordinates precision'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Latitude" [value]="formatCoordinates(location.latitude, 'latitude')"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Longitude" [value]="formatCoordinates(location.longitude, 'longitude')"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Geographical location" [test]="location.additionalInfo['Geographical location']"> <ng-template> {{ location.additionalInfo['Geographical location'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Country name" [test]="location.countryName && !location.additionalInfo['Geographical location']"> <ng-template> {{ location.countryName }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Country code" [test]="location.countryCode && !location.additionalInfo['Geographical location']"> <ng-template> {{ location.countryCode }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Altitude" [value]="location.altitude"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Slope" [value]="location.additionalInfo['Slope']"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Exposure" [test]="location.additionalInfo['Exposure']"> <ng-template> {{ location.additionalInfo['Exposure'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Topography" [test]="location.additionalInfo['Topography']"> <ng-template> {{ location.additionalInfo['Topography'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Environment type" [test]="location.additionalInfo['Environment type']"> <ng-template> {{ location.additionalInfo['Environment type'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Distance to city" [test]="location.additionalInfo['Distance to city']"> <ng-template> {{ location.additionalInfo['Distance to city'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Direction from city" [test]="location.additionalInfo['Direction from city']"> <ng-template> {{ location.additionalInfo['Direction from city'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Comment" [test]="location.additionalInfo['Comment']"> <ng-template> {{ location.additionalInfo['Comment'] }} </ng-template> - </gpds-card-row> + </faidare-card-row> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> - <gpds-card-section + <faidare-card-section header="Additional information" [test]="additionalInfos && additionalInfos.length > 0"> <ng-template> <div class="card-body card-section-body"> <ng-container *ngFor="let additionalInfo of additionalInfos"> - <gpds-card-row + <faidare-card-row [label]="additionalInfo.key" [value]="additionalInfo.value"> - </gpds-card-row> + </faidare-card-row> </ng-container> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--XRefs part --> - <gpds-xrefs [xrefId]="location.locationDbId"></gpds-xrefs> + <faidare-xrefs [xrefId]="location.locationDbId"></faidare-xrefs> </ng-container> diff --git a/frontend/src/app/site-card/site-card.component.ts b/frontend/src/app/site-card/site-card.component.ts index 67888dcf1284bad1c061ddd166bd168e73e4cdcf..a376c2e709fbae155a1409907c919d8ac6ec86f4 100644 --- a/frontend/src/app/site-card/site-card.component.ts +++ b/frontend/src/app/site-card/site-card.component.ts @@ -7,7 +7,7 @@ import { DataDiscoverySource } from '../models/data-discovery.model'; import { GnpisService } from '../gnpis.service'; @Component({ - selector: 'gpds-site-card', + selector: 'faidare-site-card', templateUrl: './site-card.component.html', styleUrls: ['./site-card.component.scss'] }) diff --git a/frontend/src/app/study-card/study-card.component.html b/frontend/src/app/study-card/study-card.component.html index 4f02436ca99e4ecc359ab9e939c145134f9dc613..3218208f8a0266ec506d56ef6de30568ddd1be1d 100644 --- a/frontend/src/app/study-card/study-card.component.html +++ b/frontend/src/app/study-card/study-card.component.html @@ -1,4 +1,4 @@ -<gpds-loading-spinner [loading]="loading" class="float-right"></gpds-loading-spinner> +<faidare-loading-spinner [loading]="loading" class="float-right"></faidare-loading-spinner> <ng-container *ngIf="study"> <h3> @@ -6,31 +6,31 @@ </h3> <!-- Display the map --> - <gpds-map [locations]="[study.location]"></gpds-map> + <faidare-map [locations]="[study.location]"></faidare-map> <!-- Display the study's info --> - <gpds-card-section + <faidare-card-section header="Identification"> <ng-template> <div class="card-body card-section-body"> - <gpds-card-row + <faidare-card-row label="Name" [value]="study.studyName"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Identifier" [value]="study.studyDbId"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Permanent unique identifier" [test]="study['@id'] && isNotURN(study['@id'])" [value]="study['@id']"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Source" [test]="studySource"> <ng-template> @@ -39,9 +39,9 @@ <img [src]="studySource['schema:image']" alt="Study source image"/> </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Data source" [test]="studySource && studySource['schema:identifier'] && study.documentationURL"> <ng-template> @@ -49,35 +49,35 @@ Link to this study on {{ studySource["schema:identifier"] }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Project name" [value]="study.programName"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Description" [value]="study.studyDescription"> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Active" [test]="study.active != null"> <ng-template> {{ study.active ? "Yes" : "No" }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Seasons" [test]="study.seasons && study.seasons.length != 0"> <ng-template> {{ study.seasons.join(', ') }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Date" [test]="study.startDate"> <ng-template> @@ -85,9 +85,9 @@ 'From ' + study.startDate + ' to ' + study.endDate : 'Started on ' + study.startDate }} </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Location name" [test]="study.location && study.location.locationDbId"> <ng-template> @@ -95,9 +95,9 @@ {{ study.location.locationName }} </a> </ng-template> - </gpds-card-row> + </faidare-card-row> - <gpds-card-row + <faidare-card-row label="Data files" [test]="study.dataLinks && study.dataLinks.length != 0"> <ng-template> @@ -107,18 +107,18 @@ </a> </div> </ng-template> - </gpds-card-row> + </faidare-card-row> </div> </ng-template> - </gpds-card-section> + </faidare-card-section> - <gpds-card-section + <faidare-card-section header="Genotype" [test]="studyGermplasms && studyGermplasms.length != 0"> <ng-template> - <gpds-card-table + <faidare-card-table [headers]="[ 'Accession number', 'Name', @@ -136,16 +136,16 @@ <td>{{ row.genus }} {{ row.species }} {{ row.subtaxa }}</td> </tr> </ng-template> - </gpds-card-table> + </faidare-card-table> </ng-template> - </gpds-card-section> + </faidare-card-section> - <gpds-card-section + <faidare-card-section header="Variables" [test]="studyObservationVariables && studyObservationVariables.length != 0"> <ng-template> - <gpds-card-table + <faidare-card-table [headers]="[ 'Variable id', 'Variable short name', @@ -169,15 +169,15 @@ <td>{{ row.trait.description }}</td> </tr> </ng-template> - </gpds-card-table> + </faidare-card-table> </ng-template> - </gpds-card-section> + </faidare-card-section> - <gpds-card-section + <faidare-card-section header="Data Set" [test]="studyDataset && studyDataset.length != 0"> <ng-template> - <gpds-card-table + <faidare-card-table [headers]="[ 'Name', 'Type', @@ -204,15 +204,15 @@ </td> </tr> </ng-template> - </gpds-card-table> + </faidare-card-table> </ng-template> - </gpds-card-section> + </faidare-card-section> - <gpds-card-section + <faidare-card-section header="Contact" [test]="study.contacts && study.contacts.length != 0"> <ng-template> - <gpds-card-table + <faidare-card-table [headers]="[ 'Role', 'Name', @@ -228,15 +228,15 @@ <td>{{ row.institutionName }}</td> </tr> </ng-template> - </gpds-card-table> + </faidare-card-table> </ng-template> - </gpds-card-section> + </faidare-card-section> - <gpds-card-section + <faidare-card-section header="Additional information" [test]="additionalInfos && additionalInfos.length != 0"> <ng-template> - <gpds-card-table + <faidare-card-table [rows]="additionalInfos"> <ng-template let-row> <tr> @@ -244,10 +244,10 @@ <td>{{ row.value }}</td> </tr> </ng-template> - </gpds-card-table> + </faidare-card-table> </ng-template> - </gpds-card-section> + </faidare-card-section> <!--XRefs part --> - <gpds-xrefs [xrefId]="study.studyDbId"></gpds-xrefs> + <faidare-xrefs [xrefId]="study.studyDbId"></faidare-xrefs> </ng-container> diff --git a/frontend/src/app/study-card/study-card.component.ts b/frontend/src/app/study-card/study-card.component.ts index 8b85644152ceb9519f958973250b2bfaa322ac7f..2d45e2948a2615a57a96cd831ef948e9381e197f 100644 --- a/frontend/src/app/study-card/study-card.component.ts +++ b/frontend/src/app/study-card/study-card.component.ts @@ -8,7 +8,7 @@ import { DataDiscoverySource } from '../models/data-discovery.model'; import { KeyValueObject, toKeyValueObjects } from '../utils'; @Component({ - selector: 'gpds-study-card', + selector: 'faidare-study-card', templateUrl: './study-card.component.html', styleUrls: ['./study-card.component.scss'] }) diff --git a/frontend/src/app/xrefs/xrefs.component.html b/frontend/src/app/xrefs/xrefs.component.html index 36d80e9b53d2d7183765359c9bcb343028b2a4e5..d4015a238069976f05e4830c7eca56511b8addd8 100644 --- a/frontend/src/app/xrefs/xrefs.component.html +++ b/frontend/src/app/xrefs/xrefs.component.html @@ -1,7 +1,7 @@ -<gpds-card-section *ngIf="xrefs.length > 0" +<faidare-card-section *ngIf="xrefs.length > 0" header="Cross References"> <ng-template> - <gpds-card-table + <faidare-card-table [headers]="[ 'Name', 'Source', @@ -17,6 +17,6 @@ <td>{{ crossRef.description | slice:0:120 }}...</td> </tr> </ng-template> - </gpds-card-table> + </faidare-card-table> </ng-template> -</gpds-card-section> +</faidare-card-section> diff --git a/frontend/src/app/xrefs/xrefs.component.ts b/frontend/src/app/xrefs/xrefs.component.ts index 3a7ff5c75aae044cfa2d294ca8d5f2214e5c90eb..fd97128c09209f4ea2f7ec26729b5669b5e18d6e 100644 --- a/frontend/src/app/xrefs/xrefs.component.ts +++ b/frontend/src/app/xrefs/xrefs.component.ts @@ -3,7 +3,7 @@ import { GnpisService } from '../gnpis.service'; import { XrefModel } from '../models/xref.model'; @Component({ - selector: 'gpds-xrefs', + selector: 'faidare-xrefs', templateUrl: './xrefs.component.html', styleUrls: ['./xrefs.component.scss'] }) diff --git a/frontend/src/assets/gpds/favicon.ico b/frontend/src/assets/faidare/favicon.ico similarity index 100% rename from frontend/src/assets/gpds/favicon.ico rename to frontend/src/assets/faidare/favicon.ico diff --git a/frontend/src/assets/gpds/images/marker-icon-blue.png b/frontend/src/assets/faidare/images/marker-icon-blue.png similarity index 100% rename from frontend/src/assets/gpds/images/marker-icon-blue.png rename to frontend/src/assets/faidare/images/marker-icon-blue.png diff --git a/frontend/src/assets/gpds/images/marker-icon-green.png b/frontend/src/assets/faidare/images/marker-icon-green.png similarity index 100% rename from frontend/src/assets/gpds/images/marker-icon-green.png rename to frontend/src/assets/faidare/images/marker-icon-green.png diff --git a/frontend/src/assets/gpds/images/marker-icon-purple.png b/frontend/src/assets/faidare/images/marker-icon-purple.png similarity index 100% rename from frontend/src/assets/gpds/images/marker-icon-purple.png rename to frontend/src/assets/faidare/images/marker-icon-purple.png diff --git a/frontend/src/assets/gpds/images/marker-icon-red.png b/frontend/src/assets/faidare/images/marker-icon-red.png similarity index 100% rename from frontend/src/assets/gpds/images/marker-icon-red.png rename to frontend/src/assets/faidare/images/marker-icon-red.png diff --git a/frontend/src/assets/gpds/logo.png b/frontend/src/assets/faidare/logo.png similarity index 100% rename from frontend/src/assets/gpds/logo.png rename to frontend/src/assets/faidare/logo.png diff --git a/frontend/src/assets/gpds/theme.scss b/frontend/src/assets/faidare/theme.scss similarity index 100% rename from frontend/src/assets/gpds/theme.scss rename to frontend/src/assets/faidare/theme.scss diff --git a/frontend/src/environments/environment.prod.ts b/frontend/src/environments/environment.prod.ts index 2b34b7fd446b963a2f5af1aaf9f47f555570498a..5c875b419bbf487516f93bc5d709287e00af57b3 100644 --- a/frontend/src/environments/environment.prod.ts +++ b/frontend/src/environments/environment.prod.ts @@ -2,7 +2,7 @@ export const environment = { production: false, navbar: { - title: 'GnpIS Plant Data Search', + title: 'FAIDARE : FAIR Data-finder for Agronomic REsearch', links: [ { label: 'URGI', diff --git a/frontend/src/environments/environment.ts b/frontend/src/environments/environment.ts index 081a6813fd51e32e8e0d9bb72186227c57adeb3f..45ed45631fbef8033422655a030635c6ffed0aad 100644 --- a/frontend/src/environments/environment.ts +++ b/frontend/src/environments/environment.ts @@ -5,7 +5,7 @@ export const environment = { production: false, navbar: { - title: 'GnpIS Plant Data Search', + title: 'FAIDARE : FAIR Data-finder for Agronomic REsearch', links: [ { label: 'URGI', diff --git a/frontend/src/index.html b/frontend/src/index.html index 4bd324c508b00429a2f5083674209370f73b1903..9ff8eaa8140346f1909964e45cb0de8222fc5e72 100644 --- a/frontend/src/index.html +++ b/frontend/src/index.html @@ -9,6 +9,6 @@ <link rel="icon" type="image/x-icon" href="favicon.ico"> </head> <body> - <gpds-root></gpds-root> + <faidare-root></faidare-root> </body> </html> diff --git a/frontend/src/tslint.json b/frontend/src/tslint.json index 87a3bff4867cfc072c8a420d4b28b74563592090..97be2aaf26914218cc66d277eb23e054d01e66b9 100644 --- a/frontend/src/tslint.json +++ b/frontend/src/tslint.json @@ -4,13 +4,13 @@ "directive-selector": [ true, "attribute", - "gpds", + "faidare", "camelCase" ], "component-selector": [ true, "element", - "gpds", + "faidare", "kebab-case" ], "template-cyclomatic-complexity": [ diff --git a/settings.gradle.kts b/settings.gradle.kts index 32a76ee4f7b1ea79a6cfe6cdb53432a48fb8995b..4bd5a482217fc2c6b3921cafc0bdb602ebd96641 100644 --- a/settings.gradle.kts +++ b/settings.gradle.kts @@ -1,2 +1,2 @@ -rootProject.name = "gpds" +rootProject.name = "faidare" include("backend", "frontend")