diff --git a/ancillaries/BioNLP-OST+EnovFood.obo b/ancillaries/BioNLP-OST+EnovFood.obo index 1588bf548e0ea42b5078ec223838ff8a4cde33c8..dc6a9d66a7e1a3a6eafefa6765f723e362203b5b 100644 --- a/ancillaries/BioNLP-OST+EnovFood.obo +++ b/ancillaries/BioNLP-OST+EnovFood.obo @@ -1,22 +1,22 @@ format-version: 1.2 -date: 25:02:2021 17:05 +date: 09:04:2021 17:05 saved-by: claire auto-generated-by: OBO-Edit 2.3.1 ontology: OntoBiotope [Term] id: OBT:000000 -name: root for extraction +name: OntoBiotope root [Term] id: OBT:000001 name: microbial habitat -is_a: OBT:000000 ! root for extraction +is_a: OBT:000000 ! OntoBiotope root [Term] id: OBT:000002 name: microbial phenotype -is_a: OBT:000000 ! root for extraction +is_a: OBT:000000 ! OntoBiotope root [Term] id: OBT:000003 @@ -917,8 +917,9 @@ is_a: OBT:000007 ! experimental medium [Term] id: OBT:000171 name: zoo -synonym: "zoo garden" RELATED [TyDI:55262] -synonym: "zoo park" RELATED [TyDI:55261] +synonym: "zoo garden" EXACT [TyDI:55262] +synonym: "zoo park" EXACT [TyDI:55261] +synonym: "zoological garden" EXACT [] is_a: OBT:000004 ! animal husbandry and agricultural habitat [Term] @@ -1242,7 +1243,7 @@ is_a: OBT:000039 ! animal part id: OBT:000232 name: city synonym: "urban area" EXACT [TyDI:55802] -is_a: OBT:000066 ! constructed habitat +is_a: OBT:004147 ! urban area [Term] id: OBT:000233 @@ -2142,7 +2143,7 @@ is_a: OBT:000145 ! public equipment [Term] id: OBT:000405 name: public transport -is_a: OBT:000066 ! constructed habitat +is_a: OBT:000006 ! artificial environment [Term] id: OBT:000406 @@ -2714,7 +2715,6 @@ is_a: OBT:000386 ! phenotype wrt shape [Term] id: OBT:000514 name: bile -synonym: "gall" RELATED [TyDI:57924] is_a: OBT:000215 ! body fluid [Term] @@ -5993,7 +5993,9 @@ is_a: OBT:000706 ! leukocyte [Term] id: OBT:001135 name: grass plant +synonym: "Gramineae" NARROW [] synonym: "grass" EXACT [TyDI:49773] +synonym: "Poaceae" NARROW [] is_a: OBT:000912 ! terrestrial plant [Term] @@ -6195,6 +6197,7 @@ is_a: OBT:000611 ! effluent [Term] id: OBT:001174 name: leaf +synonym: "foliage" EXACT [] synonym: "plant leaf" EXACT [TyDI:51761] is_a: OBT:000807 ! phylloplane part @@ -7505,7 +7508,7 @@ is_a: OBT:001234 ! offal and product thereof [Term] id: OBT:001424 name: ant -is_a: OBT:001163 ! insect +is_a: OBT:004128 ! Hymenoptera [Term] id: OBT:001425 @@ -7525,7 +7528,7 @@ is_a: OBT:000990 ! artery [Term] id: OBT:001428 name: aphid -is_a: OBT:001163 ! insect +is_a: OBT:004130 ! Hemiptera [Term] id: OBT:001429 @@ -7591,7 +7594,7 @@ is_a: OBT:001044 ! condiment [Term] id: OBT:001441 name: bee -is_a: OBT:001163 ! insect +is_a: OBT:004128 ! Hymenoptera [Term] id: OBT:001442 @@ -7708,7 +7711,7 @@ is_a: OBT:001336 ! stem part [Term] id: OBT:001464 name: bug -is_a: OBT:001163 ! insect +is_a: OBT:004130 ! Hemiptera [Term] id: OBT:001465 @@ -7858,6 +7861,7 @@ is_a: OBT:001293 ! sand [Term] id: OBT:001493 name: cockroach +synonym: "Blattodea" EXACT [] is_a: OBT:001163 ! insect [Term] @@ -8052,7 +8056,7 @@ is_a: OBT:001078 ! drink [Term] id: OBT:001531 name: drosophila -is_a: OBT:001163 ! insect +is_a: OBT:002051 ! fruit fly [Term] id: OBT:001532 @@ -8161,7 +8165,7 @@ is_a: OBT:001209 ! milled food [Term] id: OBT:001553 name: fly -is_a: OBT:001163 ! insect +is_a: OBT:004129 ! Diptera [Term] id: OBT:001554 @@ -8469,7 +8473,7 @@ is_a: OBT:001175 ! leaf part [Term] id: OBT:001612 name: leafhopper -is_a: OBT:001163 ! insect +is_a: OBT:004130 ! Hemiptera [Term] id: OBT:001613 @@ -8676,7 +8680,7 @@ is_a: OBT:001301 ! seafood and seafood product [Term] id: OBT:001652 name: moth -is_a: OBT:001163 ! insect +is_a: OBT:004127 ! lepidoptera [Term] id: OBT:001653 @@ -9408,7 +9412,7 @@ is_a: OBT:001106 ! flower part [Term] id: OBT:001791 name: stink bug -is_a: OBT:001163 ! insect +is_a: OBT:004130 ! Hemiptera [Term] id: OBT:001792 @@ -9528,7 +9532,7 @@ is_a: OBT:001184 ! lower gastrointestinal tract part [Term] id: OBT:001814 name: termite -is_a: OBT:001163 ! insect +is_a: OBT:004130 ! Hemiptera [Term] id: OBT:001815 @@ -9663,7 +9667,7 @@ is_a: OBT:001373 ! warehouse [Term] id: OBT:001840 name: wasp -is_a: OBT:001163 ! insect +is_a: OBT:004128 ! Hymenoptera [Term] id: OBT:001841 @@ -11292,6 +11296,7 @@ is_a: OBT:001570 ! fruiting vegetable [Term] id: OBT:002158 name: oleander +synonym: "Nerium oleander" EXACT [] is_a: OBT:001771 ! shrub [Term] @@ -15568,8 +15573,7 @@ is_a: OBT:002906 ! fruit [Term] id: OBT:002954 name: amended soil -is_a: OBT:000067 ! cultivated habitat -is_a: OBT:001857 ! agricultural soil +is_a: OBT:004135 ! cultivated soil [Term] id: OBT:002955 @@ -15690,8 +15694,7 @@ is_a: OBT:002018 ! environmental water with chemical property [Term] id: OBT:002977 name: cotton cultivated soil -is_a: OBT:000067 ! cultivated habitat -is_a: OBT:001857 ! agricultural soil +is_a: OBT:004135 ! cultivated soil [Term] id: OBT:002978 @@ -15999,8 +16002,7 @@ is_a: OBT:002903 ! farmed fish id: OBT:003032 name: unamended soil synonym: "unamended control soil" RELATED [TyDI:51282] -is_a: OBT:000067 ! cultivated habitat -is_a: OBT:001857 ! agricultural soil +is_a: OBT:004135 ! cultivated soil [Term] id: OBT:003033 @@ -16686,6 +16688,7 @@ is_a: OBT:003104 ! livestock manure [Term] id: OBT:003151 name: garlic plant +synonym: "Allium sativum" EXACT [] is_a: OBT:001389 ! Allium is_a: OBT:001632 ! market garden plant @@ -16732,6 +16735,7 @@ is_a: OBT:003109 ! olive and primary derivative thereof [Term] id: OBT:003159 name: onion plant +synonym: "Allium cepa" EXACT [] is_a: OBT:001389 ! Allium is_a: OBT:001632 ! market garden plant @@ -17424,17 +17428,7 @@ is_a: OBT:002780 ! cultivated Leguminosae [Term] id: OBT:003278 name: brocoli -is_a: OBT:003255 ! cultivated crucifer - -[Term] -id: OBT:003279 -name: brussel sprout -is_a: OBT:003255 ! cultivated crucifer - -[Term] -id: OBT:003280 -name: cabbage -is_a: OBT:003255 ! cultivated crucifer +is_a: OBT:001391 ! Brassica [Term] id: OBT:003281 @@ -18613,12 +18607,6 @@ id: OBT:003486 name: blue veined cheese is_a: OBT:003458 ! semi soft cheese -[Term] -id: OBT:003487 -name: cauliflower -is_a: OBT:001391 ! Brassica -is_a: OBT:003255 ! cultivated crucifer - [Term] id: OBT:003488 name: chloroethene-contaminated aquifer @@ -19937,7 +19925,8 @@ creation_date: 2020-10-27T12:51:57Z [Term] id: OBT:003699 -name: brussel sprout plant +name: brussels sprout +synonym: "Brassica oleracea var. gemmifera" EXACT [] is_a: OBT:001391 ! Brassica is_a: OBT:001632 ! market garden plant created_by: Claire_Nedellec @@ -22696,7 +22685,7 @@ creation_date: 2021-02-18T17:35:57Z [Term] id: OBT:004107 name: planthopper -is_a: OBT:001163 ! insect +is_a: OBT:004130 ! Hemiptera created_by: Claire_Nedellec creation_date: 2021-02-18T17:35:57Z @@ -22705,7 +22694,7 @@ id: OBT:004108 name: jumping plant lice synonym: "Psyllidae" NARROW [] synonym: "psyllids" NARROW [] -is_a: OBT:001163 ! insect +is_a: OBT:004130 ! Hemiptera created_by: Claire_Nedellec creation_date: 2021-02-18T17:35:57Z @@ -22740,8 +22729,9 @@ creation_date: 2021-02-18T17:35:57Z [Term] id: OBT:004113 -name: Myzus persicae -synonym: "green peach aphid" EXACT [] +name: green peach aphid +synonym: "Myzus persicae" EXACT [] +synonym: "peach-potato aphid" EXACT [] is_a: OBT:001428 ! aphid created_by: Claire_Nedellec creation_date: 2021-02-18T17:35:57Z @@ -22796,7 +22786,7 @@ creation_date: 2021-02-18T17:35:57Z id: OBT:004120 name: Asian citrus psyllid synonym: "Diaphorina citri" EXACT [] -is_a: OBT:004108 ! jumping plant lice +is_a: OBT:004131 ! citrus psyllid created_by: Claire_Nedellec creation_date: 2021-02-18T17:35:57Z @@ -22821,6 +22811,362 @@ is_a: OBT:004109 ! sap-feeding insect created_by: Claire_Nedellec creation_date: 2021-02-18T17:35:57Z +[Term] +id: OBT:004124 +name: coleoptera +is_a: OBT:001163 ! insect +created_by: Claire_Nedellec +creation_date: 2021-02-18T17:35:57Z + +[Term] +id: OBT:004125 +name: bronze birch borer +synonym: "Agrilus anxius" NARROW [] +is_a: OBT:004115 ! phytophagous insect +is_a: OBT:004124 ! coleoptera +created_by: Claire_Nedellec +creation_date: 2021-02-18T17:35:57Z + +[Term] +id: OBT:004126 +name: emerald ash borer +synonym: "Agrilus planipennis" NARROW [] +is_a: OBT:004115 ! phytophagous insect +is_a: OBT:004124 ! coleoptera +created_by: Claire_Nedellec +creation_date: 2021-02-18T17:35:57Z + +[Term] +id: OBT:004127 +name: lepidoptera +is_a: OBT:001163 ! insect +created_by: Claire_Nedellec +creation_date: 2021-02-18T17:35:57Z + +[Term] +id: OBT:004128 +name: Hymenoptera +is_a: OBT:001163 ! insect +created_by: Claire_Nedellec +creation_date: 2021-02-18T17:35:57Z + +[Term] +id: OBT:004129 +name: Diptera +is_a: OBT:001163 ! insect +created_by: Claire_Nedellec +creation_date: 2021-02-18T17:35:57Z + +[Term] +id: OBT:004130 +name: Hemiptera +is_a: OBT:001163 ! insect +created_by: Claire_Nedellec +creation_date: 2021-02-18T17:35:57Z + +[Term] +id: OBT:004131 +name: citrus psyllid +is_a: OBT:004108 ! jumping plant lice +created_by: Claire_Nedellec +creation_date: 2021-02-18T17:35:57Z + +[Term] +id: OBT:004132 +name: plant gall +synonym: "gall" EXACT [] +is_a: OBT:004136 ! plant tumor tissue +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004133 +name: plant lesion +is_a: OBT:000395 ! plant part +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004134 +name: rapeseed +synonym: "Brassica napus" EXACT [] +is_a: OBT:001391 ! Brassica +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004135 +name: cultivated soil +is_a: OBT:000067 ! cultivated habitat +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004136 +name: plant tumor tissue +is_a: OBT:000816 ! plant tissue +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004137 +name: leek +synonym: "Allium ampeloprasum" EXACT [] +synonym: "Allium porrum" EXACT [] +is_a: OBT:001389 ! Allium +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004138 +name: cabbage +synonym: "Brassica oleracea var. capitata" EXACT [] +is_a: OBT:001391 ! Brassica +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004139 +name: Russian wheat aphid +synonym: "Diuraphis noxia" EXACT [] +is_a: OBT:001428 ! aphid +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004140 +name: olive knot +is_a: OBT:004132 ! plant gall +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004141 +name: gum arabic tree +synonym: "Acacia senegal" EXACT [] +synonym: "Senegalia senegal" EXACT [] +is_a: OBT:004072 ! deciduous tree +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004142 +name: cauliflower +synonym: "Brassica oleracea var. botrytis" EXACT [] +is_a: OBT:004138 ! cabbage +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004143 +name: Sorghum +is_a: OBT:001135 ! grass plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004144 +name: milo +synonym: "Sorghum bicolor" EXACT [] +synonym: "Sorghum vulgare" EXACT [] +is_a: OBT:004143 ! Sorghum +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004145 +name: common millet +synonym: "broom millet" EXACT [] +synonym: "broomcorn millet" EXACT [] +synonym: "Panicum miliaceum" EXACT [] +is_a: OBT:001135 ! grass plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004146 +name: barley +synonym: "Hordeum vulgare" EXACT [] +is_a: OBT:001135 ! grass plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004147 +name: urban area +is_a: OBT:000006 ! artificial environment +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004148 +name: urban green area +is_a: OBT:004147 ! urban area +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004149 +name: city park +is_a: OBT:004148 ! urban green area +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004150 +name: green roof +is_a: OBT:004148 ! urban green area +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004151 +name: garden +is_a: OBT:004148 ! urban green area +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004152 +name: botanical garden +is_a: OBT:004148 ! urban green area +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004153 +name: turnip plant +synonym: "Brassica rapa subsp. rapa" EXACT [] +is_a: OBT:001391 ! Brassica +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004154 +name: papaya tree +synonym: "Carica papaya" EXACT [] +is_a: OBT:001360 ! tree +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004155 +name: plant exudate +is_a: OBT:000395 ! plant part +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004156 +name: root exudate +is_a: OBT:004155 ! plant exudate +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004157 +name: Welsh onion +synonym: "Allium fistulosum" EXACT [] +synonym: "bunching onion" EXACT [] +is_a: OBT:002539 ! onion +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004158 +name: playground +is_a: OBT:004147 ! urban area +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004159 +name: bramble +synonym: "Rubus" EXACT [] +is_a: OBT:000912 ! terrestrial plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004160 +name: thornless blackberry +synonym: "Rubus ulmifolius" EXACT [] +is_a: OBT:004159 ! bramble +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004161 +name: timothy grass +synonym: "Phleum pratense" EXACT [] +is_a: OBT:001135 ! grass plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004162 +name: barrel medic +synonym: "barrelclover" EXACT [] +synonym: "Medicago truncatula" EXACT [] +is_a: OBT:003277 ! Medicago +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004165 +name: mustard plant +synonym: "Brassicaceae" EXACT [] +is_a: OBT:000912 ! terrestrial plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004166 +name: Eutrema wasabi +synonym: "Eutrema japonicum" EXACT [] +is_a: OBT:004165 ! mustard plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004168 +name: daisy plant +synonym: "Asteraceae" NARROW [] +is_a: OBT:000912 ! terrestrial plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004169 +name: chrysanthemum +is_a: OBT:004168 ! daisy plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004170 +name: rose +synonym: "Rosa" NARROW [] +is_a: OBT:000912 ! terrestrial plant +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004171 +name: saxifrage +synonym: "Saxifragales" EXACT [] +is_a: OBT:000974 ! Crassulaceae +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + +[Term] +id: OBT:004172 +name: Palm-Beach bells +synonym: "kalanchoe" EXACT [] +is_a: OBT:004171 ! saxifrage +created_by: Claire_Nedellec +creation_date: 2021-03-29T10:30:57Z + [Term] id: OBT:009115 name: palm forest